Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023359.1-P | Field mustard | cytosol | 56.41 | 69.64 |
| AT5G12010.1 | Thale cress | cytosol | 65.7 | 63.35 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 66.53 | 63.26 |
| VIT_11s0118g00530.t01 | Wine grape | cytosol | 11.36 | 28.5 |
| VIT_06s0004g04160.t01 | Wine grape | nucleus | 20.25 | 25.52 |
| VIT_03s0063g00920.t01 | Wine grape | plastid | 21.28 | 22.94 |
| VIT_07s0151g00360.t01 | Wine grape | cytosol | 19.83 | 22.43 |
| VIT_13s0019g00460.t01 | Wine grape | plastid | 17.56 | 22.02 |
| VIT_03s0063g00150.t01 | Wine grape | extracellular, vacuole | 16.53 | 17.62 |
Protein Annotations
| ArrayExpress:VIT_04s0008g01380 | EMBL:FN595231 | EnsemblPlants:VIT_04s0008g01380.t01 | EnsemblPlantsGene:VIT_04s0008g01380 | EntrezGene:100262760 | EntrezGene:LOC100262760 |
| InterPro:HARBI1_dom | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF113 | PFAM:PF13359 | ProteinID:CBI20675 | ProteinID:CBI20675.3 |
| RefSeq:XP_002280033 | RefSeq:XP_002280033.1 | SEG:seg | unigene:Vvi.3442 | UniParc:UPI00015C8B7A | UniProt:D7STS6 |
| wikigene:100262760 | wikigene:LOC100262760 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4:+:1129767..1131804
Molecular Weight (calculated)
55163.3 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.476
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDSTSNRKK RRRKDEGEGE LGVVKEGKKR DLKEIITSLL LLEEQQKRDQ EEFDRTLEEE KMVFEENHKK KTRAMMDYYS NLQDYYNELD DMDQARRKRC
101: NSASATTAAA AGAAGAASLE FSDSSVKPGS GARRLWVKDR SKAWWDECNK PEFPEEEFRK AFRMSRATFD MICDELNSVV AKEDTMLRAA IPVRQRVAVC
201: IWRLATGEPL RLVSKKFGLG ISTCHKLVLE VCSAIRTVLM PKYLQWPDEE TLRRMKDEFE SISGIPNVVG SMYTTHIPII APKISVAAYF NRRHTERNQK
301: TSYSITVQGV VDPKGVFTDV CIGWPGSMPD DQVLEKSALY QRANGGLLKG VWIVGGSGYP LMDWVMVPYT QQNLTWTQHA FNEKIGEIQR VSREAFARLK
401: ARWCCLQKRT EVKLQDLPVV LGACCVLHNI CELQNEEMDP ELRINLIDDE MIPEIPLRST TSMKARDAIA HNLLHHGLAG TAFL
101: NSASATTAAA AGAAGAASLE FSDSSVKPGS GARRLWVKDR SKAWWDECNK PEFPEEEFRK AFRMSRATFD MICDELNSVV AKEDTMLRAA IPVRQRVAVC
201: IWRLATGEPL RLVSKKFGLG ISTCHKLVLE VCSAIRTVLM PKYLQWPDEE TLRRMKDEFE SISGIPNVVG SMYTTHIPII APKISVAAYF NRRHTERNQK
301: TSYSITVQGV VDPKGVFTDV CIGWPGSMPD DQVLEKSALY QRANGGLLKG VWIVGGSGYP LMDWVMVPYT QQNLTWTQHA FNEKIGEIQR VSREAFARLK
401: ARWCCLQKRT EVKLQDLPVV LGACCVLHNI CELQNEEMDP ELRINLIDDE MIPEIPLRST TSMKARDAIA HNLLHHGLAG TAFL
001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
Arabidopsis Description
AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.