Factsheet for VIT_13s0019g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04160.t01	Wine grape	nucleus	53.37	53.65
Solyc05g054670.2.1	Tomato	cytosol	53.63	52.41
Bra007153.1-P	Field mustard	nucleus	51.3	48.89
AT3G55350.1	Thale cress	nucleus	50.0	47.54
Zm00001d006850_P001	Maize	cytosol	24.35	45.41
Zm00001d048620_P001	Maize	mitochondrion	42.49	42.05
Os11t0702700-01	Rice	mitochondrion	42.49	41.94
TraesCS3B01G389300.1	Wheat	mitochondrion	40.41	39.49
Os01t0838900-01	Rice	cytosol, mitochondrion	40.41	39.39
Zm00001d005463_P001	Maize	cytosol	16.84	39.39
TraesCS3D01G350500.1	Wheat	mitochondrion	39.38	38.38
TraesCS3A01G356500.1	Wheat	mitochondrion	38.86	37.88
HORVU6Hr1G009940.1	Barley	cytosol	29.79	37.1
HORVU6Hr1G003140.1	Barley	cytosol	16.58	35.96
VIT_07s0151g00360.t01	Wine grape	cytosol	38.86	35.05
HORVU7Hr1G122380.2	Barley	cytosol	27.72	33.65
Zm00001d038377_P002	Maize	nucleus	38.86	33.56
HORVU6Hr1G010180.1	Barley	cytosol	25.91	33.11
HORVU6Hr1G010140.1	Barley	cytosol	26.94	30.86
VIT_11s0118g00530.t01	Wine grape	cytosol	12.95	25.91
VIT_04s0008g01380.t01	Wine grape	nucleus	22.02	17.56
VIT_03s0063g00150.t01	Wine grape	extracellular, vacuole	20.47	17.4
VIT_03s0063g00920.t01	Wine grape	plastid	18.91	16.26
VIT_11s0016g01810.t01	Wine grape	nucleus	21.24	16.11

Protein Annotations

ArrayExpress:VIT_13s0019g00460	EMBL:FN595998	EnsemblPlants:VIT_13s0019g00460.t01	EnsemblPlantsGene:VIT_13s0019g00460	InterPro:HARBI1_dom	PANTHER:PTHR22930
PANTHER:PTHR22930:SF110	PFAM:PF13359	ProteinID:CCB56379	ProteinID:CCB56379.1	SEG:seg	UniParc:UPI000210853A
UniProt:F6HN91	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr13:+:2485302..2488580

Molecular Weight (calculated)

43962.1 Da

IEP (calculated)

8.970

GRAVY (calculated)

-0.293

Length

386 amino acids

Sequence
(BLAST)

001: MAKPANFSAS NGNPLSLNDR VAIALRRLSS GESFSIVGDS FGVNQSTVAQ ITWKFVESME VRGLHHLQWP STEADMEETK SSFEKIRGLP NCCGAVDTTH
101: ISMSLSTMGT SNKVWIDHQK KHSMILQAIV DPEMRFRDVI TGWPGSLSES CVLQNSGFFK LSEEGKRLNG KMIELSEGTY LREYIVGDAG FPLLPWLLTP
201: YQGKGLSDFQ SEFNKRHFAT RMVARRALAR LKEMWRIIQG VMWRPDTNKL PRIILVCCLL HNIVIDLEDG VQDEMPFSYK HDPGYRQRSC ESVDKTAFIQ
301: RENLSLYFPI QASKRYSTVI GTILRPLGLG FWKMEVKKII KDKKFWVASF LVAWAAALQG HMMWLQRQDA FKQKFGDLGQ DHDPEN

Best Arabidopsis Sequence Match ( AT3G55350.1 )
(BLAST)

001: MGPIKTIKKK KRAEKKVDRN VLLAATAAAT SASAAAALNN NDDDDDSSSQ SLDWWDGFSR RIYGGSTDPK TFESVFKISR KTFDYICSLV KADFTAKPAN
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA

Arabidopsis Description

Protein ALP1-like [Source:UniProtKB/Swiss-Prot;Acc:Q9M2U3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.