Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G010180.1 | Barley | cytosol | 94.94 | 55.96 |
| HORVU6Hr1G010140.1 | Barley | cytosol | 95.51 | 50.45 |
| HORVU6Hr1G009940.1 | Barley | cytosol | 55.62 | 31.94 |
| HORVU7Hr1G122380.2 | Barley | cytosol | 39.89 | 22.33 |
| Os11t0702700-01 | Rice | mitochondrion | 46.63 | 21.23 |
| Zm00001d048620_P001 | Maize | mitochondrion | 45.51 | 20.77 |
| Solyc11g073090.1.1 | Tomato | cytosol | 36.52 | 19.76 |
| VIT_06s0004g04160.t01 | Wine grape | nucleus | 41.01 | 19.01 |
| Solyc05g054670.2.1 | Tomato | cytosol | 39.89 | 17.97 |
| Bra007153.1-P | Field mustard | nucleus | 39.33 | 17.28 |
| AT3G55350.1 | Thale cress | nucleus | 38.76 | 17.0 |
| VIT_13s0019g00460.t01 | Wine grape | plastid | 35.96 | 16.58 |
| Zm00001d006850_P001 | Maize | cytosol | 14.61 | 12.56 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G003140.1 | EnsemblPlantsGene:HORVU6Hr1G003140 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 | GO:GO:0016788 |
| InterPro:Harbinger_derived_prot | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF85 | PFAM:PF04827 | SEG:seg | UniParc:UPI000B4786E0 |
| UniProt:A0A287T5X8 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:7338744..7339500
Molecular Weight (calculated)
20214.2 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.290
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: CSLVKVPSWE YTDSYTFVDG RVLSLEDKVA VALRRLYSTE PSETLESSLG VNESTILLVT ERFVAAVYER GMHHVHWPDS SKMDKIKYML GNIHNMHNCC
101: GVIHTTHVPF GPNYGHGKTE NIIMQYFVDP EMRFWNIHLT SAGSMDQLSI LQNSKFFKEC EKGAHLNGSK LKAYLDGP
101: GVIHTTHVPF GPNYGHGKTE NIIMQYFVDP EMRFWNIHLT SAGSMDQLSI LQNSKFFKEC EKGAHLNGSK LKAYLDGP
001: MGPIKTIKKK KRAEKKVDRN VLLAATAAAT SASAAAALNN NDDDDDSSSQ SLDWWDGFSR RIYGGSTDPK TFESVFKISR KTFDYICSLV KADFTAKPAN
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA
Arabidopsis Description
Protein ALP1-like [Source:UniProtKB/Swiss-Prot;Acc:Q9M2U3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.