Factsheet for Solyc05g054670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g073090.1.1	Tomato	cytosol	49.62	59.57
Bra007153.1-P	Field mustard	nucleus	59.24	57.78
AT3G55350.1	Thale cress	nucleus	55.95	54.43
VIT_13s0019g00460.t01	Wine grape	plastid	52.41	53.63
Zm00001d048620_P001	Maize	mitochondrion	50.89	51.54
Os11t0702700-01	Rice	mitochondrion	49.87	50.38
Zm00001d005463_P001	Maize	cytosol	19.75	47.27
Zm00001d006850_P001	Maize	cytosol	24.3	46.38
Os01t0838900-01	Rice	cytosol, mitochondrion	44.81	44.7
TraesCS3B01G389300.1	Wheat	mitochondrion	44.56	44.56
TraesCS3D01G350500.1	Wheat	mitochondrion	44.3	44.19
TraesCS3A01G356500.1	Wheat	mitochondrion	43.54	43.43
Solyc06g084150.2.1	Tomato	cytosol	39.24	42.23
HORVU6Hr1G003140.1	Barley	cytosol	17.97	39.89
HORVU6Hr1G010180.1	Barley	cytosol	29.37	38.41
Zm00001d038377_P002	Maize	nucleus	41.27	36.47
HORVU6Hr1G010140.1	Barley	cytosol	30.63	35.91
HORVU7Hr1G122380.2	Barley	cytosol	28.61	35.53
HORVU6Hr1G009940.1	Barley	cytosol	27.85	35.48
Solyc08g062680.1.1	Tomato	cytosol	11.39	28.66
Solyc07g007360.1.1	Tomato	cytosol, mitochondrion, nucleus	23.54	20.85
Solyc12g009000.1.1	Tomato	cytosol	25.06	20.45
Solyc07g040960.1.1	Tomato	cytosol	23.54	18.64
Solyc01g107920.2.1	Tomato	extracellular, plasma membrane	17.47	16.67

Protein Annotations

EnsemblPlants:Solyc05g054670.2.1	EnsemblPlantsGene:Solyc05g054670.2	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF110	PFAM:PF13359
UniParc:UPI0002766CB4	UniProt:K4C2E4	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5:-:64533813..64539237

Molecular Weight (calculated)

44824.7 Da

IEP (calculated)

7.397

GRAVY (calculated)

-0.410

Length

395 amino acids

Sequence
(BLAST)

001: MGPIRGLKRK KKVEKDVDQY TPLHSSLSHV CPSDWWVDFS KRISGTSVEE GDSVTFESMF KLSRKTFNYI CSLVKDAMMS KPMNITDLSG KFLSLDDRVA
101: VALRRLSSGD SLSIVGESLG IHQSTVSQIT WRFVEAMEER GLHHIHWPTN QDDMKDIKSK FENIRGLPNC CGAVDTTHIM FCLSTADPSS KVWSDLEKNH
201: SMILQAIVDP DMRFLDVLAG WPGSLSDSLV LKSSRFFELA EEGKRLSGEK FNLSNDTELR EYIVGDSGFP LLPWLLTPYT GRELTDHQAD YNKRHFATRK
301: VAQRALARLK DKWKIIQGVM WRPDKQKLPR IILVCCLLHN ILIDLDDGVQ DEKPVTHHHD PDYGQQVGDS TDKSASIQRE KLALYLANKL PPNVP

Best Arabidopsis Sequence Match ( AT3G55350.1 )
(BLAST)

001: MGPIKTIKKK KRAEKKVDRN VLLAATAAAT SASAAAALNN NDDDDDSSSQ SLDWWDGFSR RIYGGSTDPK TFESVFKISR KTFDYICSLV KADFTAKPAN
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA

Arabidopsis Description

Protein ALP1-like [Source:UniProtKB/Swiss-Prot;Acc:Q9M2U3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.