Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G55350.1 | Thale cress | nucleus | 80.74 | 80.54 |
| Solyc05g054670.2.1 | Tomato | cytosol | 57.78 | 59.24 |
| Zm00001d005463_P001 | Maize | cytosol | 21.73 | 53.33 |
| VIT_13s0019g00460.t01 | Wine grape | plastid | 48.89 | 51.3 |
| Os11t0702700-01 | Rice | mitochondrion | 48.15 | 49.87 |
| Zm00001d048620_P001 | Maize | mitochondrion | 47.65 | 49.49 |
| Os01t0838900-01 | Rice | cytosol, mitochondrion | 46.42 | 47.47 |
| TraesCS3D01G350500.1 | Wheat | mitochondrion | 45.68 | 46.72 |
| TraesCS3B01G389300.1 | Wheat | mitochondrion | 45.43 | 46.58 |
| TraesCS3A01G356500.1 | Wheat | mitochondrion | 45.19 | 46.21 |
| Bra040441.1-P | Field mustard | cytosol | 42.96 | 45.19 |
| Zm00001d006850_P001 | Maize | cytosol | 22.72 | 44.44 |
| Zm00001d038377_P002 | Maize | nucleus | 43.95 | 39.82 |
| HORVU6Hr1G010180.1 | Barley | cytosol | 29.38 | 39.4 |
| HORVU6Hr1G003140.1 | Barley | cytosol | 17.28 | 39.33 |
| HORVU6Hr1G009940.1 | Barley | cytosol | 28.64 | 37.42 |
| HORVU6Hr1G010140.1 | Barley | cytosol | 30.62 | 36.8 |
| HORVU7Hr1G122380.2 | Barley | cytosol | 25.68 | 32.7 |
| Bra023359.1-P | Field mustard | cytosol | 23.46 | 24.23 |
| Bra013151.1-P | Field mustard | plastid | 8.4 | 14.41 |
Protein Annotations
| EnsemblPlants:Bra007153.1 | EnsemblPlants:Bra007153.1-P | EnsemblPlantsGene:Bra007153 | InterPro:HARBI1_dom | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF110 |
| PFAM:PF13359 | SEG:seg | UniParc:UPI0002542A2C | UniProt:M4CSG1 | MapMan:35.1 | : |
Description
AT3G55350 (E=8e-186) | unknown protein
Coordinates
chrA09:+:27593788..27595219
Molecular Weight (calculated)
45656.4 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.477
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPIKALKKR KRSAEKKADP NVLLAAASAA TDSLPNDNND DDDTSQPSDW WDGFSRRISG PYSGSTDPKT FESVFKVSRK TFDYICSLVK DDFTAKPANF
101: SDSNGKPLTL NDRVAVALRR LGSGESLSVI GESFGMNQST VSQITWRFVE SMEERALHHL SWPSKLDDVK SKFEKISGLP NCCGAIDITH VMMNLPNVEL
201: SNKVWLDGEK NFSMVLQAVV DPEMRFLDVI AGWPGSLSDD VVLKNSGFFK LVEKGKRLHG GKIQLSERTE LREYIVGDSG FPLLPWLLTP YQGKPMSLPQ
301: TEFNKRHSET RKPAQMALSR LKDKWRIING VMWMPDRNRL PRIIFVCCLL HNILIDMDDQ TLDDRLLSPQ HDVNYRQRSC KTVDEASSVL RDELSNQLWG
401: ENSSA
101: SDSNGKPLTL NDRVAVALRR LGSGESLSVI GESFGMNQST VSQITWRFVE SMEERALHHL SWPSKLDDVK SKFEKISGLP NCCGAIDITH VMMNLPNVEL
201: SNKVWLDGEK NFSMVLQAVV DPEMRFLDVI AGWPGSLSDD VVLKNSGFFK LVEKGKRLHG GKIQLSERTE LREYIVGDSG FPLLPWLLTP YQGKPMSLPQ
301: TEFNKRHSET RKPAQMALSR LKDKWRIING VMWMPDRNRL PRIIFVCCLL HNILIDMDDQ TLDDRLLSPQ HDVNYRQRSC KTVDEASSVL RDELSNQLWG
401: ENSSA
001: MGPIKTIKKK KRAEKKVDRN VLLAATAAAT SASAAAALNN NDDDDDSSSQ SLDWWDGFSR RIYGGSTDPK TFESVFKISR KTFDYICSLV KADFTAKPAN
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA
101: FSDSNGNPLS LNDRVAVALR RLGSGESLSV IGETFGMNQS TVSQITWRFV ESMEERAIHH LSWPSKLDEI KSKFEKISGL PNCCGAIDIT HIVMNLPAVE
201: PSNKVWLDGE KNFSMTLQAV VDPDMRFLDV IAGWPGSLND DVVLKNSGFY KLVEKGKRLN GEKLPLSERT ELREYIVGDS GFPLLPWLLT PYQGKPTSLP
301: QTEFNKRHSE ATKAAQMALS KLKDRWRIIN GVMWMPDRNR LPRIIFVCCL LHNIIIDMED QTLDDQPLSQ QHDMNYRQRS CKLADEASSV LRDELSDQLC
401: GKNSSA
Arabidopsis Description
Protein ALP1-like [Source:UniProtKB/Swiss-Prot;Acc:Q9M2U3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.