Factsheet for TraesCS1D01G449600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G475800.1	Wheat	cytosol, nucleus, plastid	97.23	97.03
TraesCS1A01G441100.1	Wheat	cytosol	91.7	93.29
Os05t0593000-01	Rice	cytosol, nucleus, plastid	58.72	65.25
Zm00001d009746_P001	Maize	cytosol, nucleus, plastid	61.49	64.08
Solyc08g062680.1.1	Tomato	cytosol	21.06	63.06
GSMUA_Achr6P00850_001	Banana	nucleus	43.83	53.93
TraesCS3D01G212000.1	Wheat	cytosol, mitochondrion, nucleus	60.0	53.01
PGSC0003DMT400000875	Potato	cytosol	50.0	52.69
GSMUA_Achr5P22180_001	Banana	nucleus	36.38	51.82
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	36.81	51.03
VIT_11s0016g01810.t01	Wine grape	nucleus	52.98	48.92
Solyc12g009000.1.1	Tomato	cytosol	49.57	48.14
PGSC0003DMT400027828	Potato	cytosol	51.7	48.02
Solyc07g040960.1.1	Tomato	cytosol	50.0	47.09
TraesCS3D01G318900.1	Wheat	cytosol	42.55	45.35
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	45.53	44.77
AT4G29780.1	Thale cress	cytosol	51.06	44.44
TraesCS3D01G111900.1	Wheat	cytosol	45.53	39.48
TraesCS3D01G111700.2	Wheat	cytosol	42.77	37.5
TraesCS3D01G350500.1	Wheat	mitochondrion	22.13	26.26
TraesCS2D01G520200.1	Wheat	mitochondrion	18.51	19.82
TraesCS7D01G124800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	14.89	18.28

Protein Annotations

EnsemblPlants:TraesCS1D01G449600.1	EnsemblPlantsGene:TraesCS1D01G449600	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF113	PFAM:PF13359
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:491794610..491796022

Molecular Weight (calculated)

51083.1 Da

IEP (calculated)

8.266

GRAVY (calculated)

-0.189

Length

470 amino acids

Sequence
(BLAST)

001: MPNRRRKREP DDGGGAAAAA GAGGAGADES KRDLDLRITN ILAEYHAPRP TRRALPLLEL NGRVLAEEDE EGEAEVVSPL TAPAPALPVV VVDGRPSKRR
101: VVAGGGGGGD EASPYQRRLW VKDRSSEWWE LRSSPGYPEA EFLREFRMGR ATFGMVCDAL GAAVAKEDTA LRAAIPVRQR VAVCVWRLAT GEPLRLVSKR
201: FGIGISTCHK LVLEVCAAIR SILMPRFLRW PDRGSAASAA VKASFEASSG VPDVVGAMYT THIPIIAPKV HVASYFNRRH TERNQKTSYS ITLQGVVGPD
301: ATFTDVCIGW PGSLADDQVL DKSALQQRAA AGMMEGSWVV GGASYPLTDW CLVPYTHQNL TWTQHAFNEK VAQLRDVAVD AFSRLKSRWA CLQKRTEVKL
401: QDLPVVLGAC CVLHNICEAR GEAMPPELRV EVEDDLAVLD NPVRSDAAAK ARDKIAHNLL HRGLAGTAFF

Best Arabidopsis Sequence Match ( AT4G29780.1 )
(BLAST)

001: MEISSFPFPY LQDDECSHFL GLFQDMDSSP STFGLEGFNS NDNNTNQKKR PRKDDEGGGG GGGGTEVLGA VNGNNKAAFG DILATLLLLD EEAKQQQEQW
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL

Arabidopsis Description

Nuclease [Source:UniProtKB/TrEMBL;Acc:Q84J48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.