Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P22180_001 | Banana | nucleus | 39.44 | 59.39 |
| GSMUA_Achr6P04860_001 | Banana | cytosol, nucleus, plastid | 40.44 | 59.29 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 56.34 | 55.01 |
| Solyc08g062680.1.1 | Tomato | cytosol | 16.3 | 51.59 |
| GSMUA_Achr6P00850_001 | Banana | nucleus | 39.64 | 51.57 |
| PGSC0003DMT400000875 | Potato | cytosol | 46.28 | 51.57 |
| PGSC0003DMT400027828 | Potato | cytosol | 49.3 | 48.42 |
| Solyc12g009000.1.1 | Tomato | cytosol | 46.48 | 47.73 |
| Solyc07g040960.1.1 | Tomato | cytosol | 47.69 | 47.49 |
| AT4G29780.1 | Thale cress | cytosol | 46.48 | 42.78 |
| GSMUA_Achr9P00980_001 | Banana | endoplasmic reticulum, plasma membrane | 13.08 | 15.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P24010_001 | EnsemblPlants:GSMUA_Achr7T24010_001 | EnsemblPlantsGene:GSMUA_Achr7G24010_001 | InterPro:HARBI1_dom | ncoils:Coil | PANTHER:PTHR22930 |
| PANTHER:PTHR22930:SF113 | PFAM:PF13359 | SEG:seg | UniParc:UPI00029637FF | UniProt:M0TK87 | MapMan:35.1 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G24010_001]
Coordinates
chr7:+:26041663..26046174
Molecular Weight (calculated)
54942.9 Da
IEP (calculated)
8.391
GRAVY (calculated)
-0.384
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MPYPACGSRS KSPPAASHGF AEYLPYMNSF PAAATTQPLL EDDFSFYISF FQDDSAAPPA SPPTSISDMP KGRRRREAGA SASGDERRKK RKSIANLLTS
101: IAAIDAQDES ERRESDEDSR RELSLLEENH HRKAEVMLDY YSRLEDNFSA LDDDADTLRS KRVRVAASAV AAAAAAASAS VENDAGPATS AAGSGHQQRR
201: LWVKDRSRAW WDQCNSPDFP EAEFRRAFRM GRATFDLICD ELGSAVAKED TMLRAAIPVR QRVAVCIWRL ATGEPLRLVS KRFGLGISTC HKLVLEVCTA
301: IKTLLMPKFV QWPDGAAAAE AKSHFEAASG IPNVIGSMYT THIPIIAPKI SVAAYFNRRH TERNQKTSYS ITVQGVVNPD GVFTDVCIGW PGSMPDDKVL
401: EQSALHQRAA AGMLKNTWIV GSSGYPLMDW VLVPYTHQNL TWTQHAFNEK IGEVQRIARE AFARLKGRWT CLQKRTEARD NIAHNLLHHG LAGTAFF
101: IAAIDAQDES ERRESDEDSR RELSLLEENH HRKAEVMLDY YSRLEDNFSA LDDDADTLRS KRVRVAASAV AAAAAAASAS VENDAGPATS AAGSGHQQRR
201: LWVKDRSRAW WDQCNSPDFP EAEFRRAFRM GRATFDLICD ELGSAVAKED TMLRAAIPVR QRVAVCIWRL ATGEPLRLVS KRFGLGISTC HKLVLEVCTA
301: IKTLLMPKFV QWPDGAAAAE AKSHFEAASG IPNVIGSMYT THIPIIAPKI SVAAYFNRRH TERNQKTSYS ITVQGVVNPD GVFTDVCIGW PGSMPDDKVL
401: EQSALHQRAA AGMLKNTWIV GSSGYPLMDW VLVPYTHQNL TWTQHAFNEK IGEVQRIARE AFARLKGRWT CLQKRTEARD NIAHNLLHHG LAGTAFF
001: MKAAVFRNED GDEEEEEEEE EEVCNVFDGG EVESKRNNET KNLKGFFTSL LLMEEHEKQD QEARNAASRR EMSDFQSNYR KRARTMSDYY SDLNDYYADA
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
101: EESGDINLKK SRVSRAVASV AVAAASEIEA ESSEITGSGS VRGTGSGQQR RLWVKDRSRA WWEECSRLDY PEEDFKKAFR MSKSTFELIC DELNSAVAKE
201: DTALRNAIPV RQRVAVCIWR LATGEPLRLV SKKFGLGIST CHKLVLEVCK AIKDVLMPKY LQWPDDESLR NIRERFESVS GIPNVVGSMY TTHIPIIAPK
301: ISVASYFNKR HTERNQKTSY SITIQAVVNP KGVFTDLCIG WPGSMPDDKV LEKSLLYQRA NNGGLLKGMW VAGGPGHPLL DWVLVPYTQQ NLTWTQHAFN
401: EKMSEVQGVA KEAFGRLKGR WACLQKRTEV KLQDLPTVLG ACCVLHNICE MREEKMEPEL MVEVIDDEVL PENVLRSVNA MKARDTISHN LLHHGLAGTS
501: FL
Arabidopsis Description
AT5g12010/F14F18_180 [Source:UniProtKB/TrEMBL;Acc:Q9LYH2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.