Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G111700.2 | Wheat | cytosol | 78.34 | 75.56 |
| TraesCS3B01G129100.1 | Wheat | cytosol | 66.34 | 64.72 |
| TraesCS3D01G111900.1 | Wheat | cytosol | 62.28 | 59.41 |
| Solyc08g062680.1.1 | Tomato | cytosol | 14.31 | 47.13 |
| TraesCS1A01G441100.1 | Wheat | cytosol | 41.39 | 46.32 |
| TraesCS1A01G121900.1 | Wheat | cytosol, extracellular, plasma membrane | 40.62 | 43.93 |
| PGSC0003DMT400000875 | Potato | cytosol | 36.56 | 42.38 |
| GSMUA_Achr5P22180_001 | Banana | nucleus | 26.5 | 41.52 |
| GSMUA_Achr6P00850_001 | Banana | nucleus | 29.59 | 40.05 |
| GSMUA_Achr6P04860_001 | Banana | cytosol, nucleus, plastid | 25.73 | 39.23 |
| Solyc12g009000.1.1 | Tomato | cytosol | 36.56 | 39.05 |
| TraesCS3A01G209100.1 | Wheat | cytosol, nucleus, plastid | 39.85 | 38.65 |
| VIT_11s0016g01810.t01 | Wine grape | nucleus | 36.94 | 37.52 |
| PGSC0003DMT400027828 | Potato | cytosol | 35.98 | 36.76 |
| Solyc07g040960.1.1 | Tomato | cytosol | 35.4 | 36.67 |
| AT4G29780.1 | Thale cress | cytosol | 35.01 | 33.52 |
| TraesCS3A01G356500.1 | Wheat | mitochondrion | 20.89 | 27.27 |
| TraesCS2A01G518800.1 | Wheat | plastid | 17.8 | 20.81 |
| TraesCS2A01G244500.1 | Wheat | nucleus | 17.6 | 19.91 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G110000.1 | EnsemblPlantsGene:TraesCS3A01G110000 | InterPro:HARBI1_dom | PANTHER:PTHR22930 | PANTHER:PTHR22930:SF64 | PFAM:PF13359 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:77410000..77411625
Molecular Weight (calculated)
55968.3 Da
IEP (calculated)
6.599
GRAVY (calculated)
-0.270
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRDQPYVGS HHYSAQNMAD GGDLSYLDYY FEQDAVPASL PAPANPQGSK KRGASAMEVD APQGQGVVGL WSEMVAEDQP GFKRQNSLWE SMDTGGGLAL
101: HVVESSVSAA RGSKRQRSPS GSIETASGGS NEDGGSETVN ESLALATVTG EKGGRRLWKK DRHNEWWDTA SSSGYPAADF SHHFRMSPYT FQVLCEQLAA
201: AVRKEDTALR AAIPVQKRVA VCVWRLATGE PLRKVADRFA IGVSTCHKLV LDVCAAIEAT VVPNVIRWPD PAAMATNAAK FEALSGIPGI IGAVYTTHVA
301: IIAPKHHVIN YLNPRATARK SKTCYSITLQ ASVDADGTFT DVRVSPGAMT GDQTLLLWSM NKPKLTGETL GEGMRLVGGA GYPLTDWMLV PYSHHNLTWT
401: QHEFNGRLAM ARAVAVGAFQ RLKARWACLQ RRTEVKVDDL SVMLGACCAL HNICERSGEP LDLQLLQGLE LDLDDDDDHM VANDPVPSPA AEQMRDTIAH
501: NMLHHGNKLA GAGTSFY
101: HVVESSVSAA RGSKRQRSPS GSIETASGGS NEDGGSETVN ESLALATVTG EKGGRRLWKK DRHNEWWDTA SSSGYPAADF SHHFRMSPYT FQVLCEQLAA
201: AVRKEDTALR AAIPVQKRVA VCVWRLATGE PLRKVADRFA IGVSTCHKLV LDVCAAIEAT VVPNVIRWPD PAAMATNAAK FEALSGIPGI IGAVYTTHVA
301: IIAPKHHVIN YLNPRATARK SKTCYSITLQ ASVDADGTFT DVRVSPGAMT GDQTLLLWSM NKPKLTGETL GEGMRLVGGA GYPLTDWMLV PYSHHNLTWT
401: QHEFNGRLAM ARAVAVGAFQ RLKARWACLQ RRTEVKVDDL SVMLGACCAL HNICERSGEP LDLQLLQGLE LDLDDDDDHM VANDPVPSPA AEQMRDTIAH
501: NMLHHGNKLA GAGTSFY
001: MEISSFPFPY LQDDECSHFL GLFQDMDSSP STFGLEGFNS NDNNTNQKKR PRKDDEGGGG GGGGTEVLGA VNGNNKAAFG DILATLLLLD EEAKQQQEQW
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL
Arabidopsis Description
Nuclease [Source:UniProtKB/TrEMBL;Acc:Q84J48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.