Factsheet for TraesCS1A01G121900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, extracellular, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G122700.1	Wheat	cytosol, extracellular, peroxisome	97.91	97.91
TraesCS1B01G141100.1	Wheat	cytosol, extracellular, peroxisome	85.15	85.86
Os05t0184901-01	Rice	cytosol, endoplasmic reticulum, peroxisome	55.65	56.84
Os05t0183900-00	Rice	cytosol	53.35	52.8
Zm00001d010344_P001	Maize	cytosol	51.88	52.21
Zm00001d010356_P001	Maize	nucleus	51.67	51.78
GSMUA_Achr5P22180_001	Banana	nucleus	34.1	49.39
GSMUA_Achr6P00850_001	Banana	nucleus	38.7	48.43
Solyc08g062680.1.1	Tomato	cytosol	15.9	48.41
GSMUA_Achr6P04860_001	Banana	cytosol, nucleus, plastid	34.1	48.08
TraesCS1A01G441100.1	Wheat	cytosol	45.19	46.75
PGSC0003DMT400000875	Potato	cytosol	41.42	44.39
Solyc12g009000.1.1	Tomato	cytosol	43.51	42.98
VIT_11s0016g01810.t01	Wine grape	nucleus	44.98	42.24
Os05t0184500-00	Rice	cytosol	30.33	40.96
PGSC0003DMT400027828	Potato	cytosol	43.31	40.91
Solyc07g040960.1.1	Tomato	cytosol	42.68	40.88
TraesCS3A01G110000.1	Wheat	cytosol	43.93	40.62
TraesCS3A01G209100.1	Wheat	cytosol, nucleus, plastid	44.77	40.15
AT4G29780.1	Thale cress	cytosol	42.68	37.78
Zm00001d010347_P001	Maize	nucleus, plastid	21.34	33.01
TraesCS3A01G356500.1	Wheat	mitochondrion	23.01	27.78
TraesCS2A01G518800.1	Wheat	plastid	20.08	21.72
TraesCS2A01G244500.1	Wheat	nucleus	19.67	20.57

Protein Annotations

EnsemblPlants:TraesCS1A01G121900.1	EnsemblPlantsGene:TraesCS1A01G121900	InterPro:HARBI1_dom	PANTHER:PTHR22930	PANTHER:PTHR22930:SF64	PFAM:PF13359
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:135967056..135968492

Molecular Weight (calculated)

51374.7 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.188

Length

478 amino acids

Sequence
(BLAST)

001: MSTYLTPFTP LPSLFDGPAA ADDHSSLLAF LMNDDLAAAP DAFPYYGGAE AAPAFFGHAA APLPPPVVAP PAEMTGQGRK RGFVPAGDDG SSRPQAVRRK
101: VQGSPPTSPA HSGGDAAPAA RSGGRRVWVR ERSTEWWDRL SGPACPDAEF RQAFRMSRAT FDALCDELSA AVAKEDTALR AAIPVHQRVA VCLWRLATGE
201: PLREVSRRFG LGISTCHNIV LQVCAALTAV LLPKAVRWPL ESPAARFQAL SGIPGVIGSV YTDHIPIGPP KDDVAEYYNR RLTERNNKAS YSVAVQAVVD
301: ADGAFTDVCI GLPGSLSDAA VLERSALHSR CETGMLGDDQ CRLVGGASYP LTDWMLVPYA HQNLTWAQHA FNERIAAARA AAQGAFQRLK GRWRCLQRRT
401: EPKLPDLHNM IGACCVLHNF CERSGEEFDA DIQSELSQQD DADVVAAANP VLSAAADKER DRIAHDLLHG GHPSVTFL

Best Arabidopsis Sequence Match ( AT4G29780.1 )
(BLAST)

001: MEISSFPFPY LQDDECSHFL GLFQDMDSSP STFGLEGFNS NDNNTNQKKR PRKDDEGGGG GGGGTEVLGA VNGNNKAAFG DILATLLLLD EEAKQQQEQW
101: DFEFIKEKSL LEANHKKKVK TMDGYYNQMQ DHYSAAGETD GSRSKRARKT AVAAVVSAVA SGADTTGLAA PVPTADIASG SGSGPSHRRL WVKERTTDWW
201: DRVSRPDFPE DEFRREFRMS KSTFNLICEE LDTTVTKKNT MLRDAIPAPK RVGVCVWRLA TGAPLRHVSE RFGLGISTCH KLVIEVCRAI YDVLMPKYLL
301: WPSDSEINST KAKFESVHKI PNVVGSIYTT HIPIIAPKVH VAAYFNKRHT ERNQKTSYSI TVQGVVNADG IFTDVCIGNP GSLTDDQILE KSSLSRQRAA
401: RGMLRDSWIV GNSGFPLTDY LLVPYTRQNL TWTQHAFNES IGEIQGIATA AFERLKGRWA CLQKRTEVKL QDLPYVLGAC CVLHNICEMR KEEMLPELKF
501: EVFDDVAVPE NNIRSASAVN TRDHISHNLL HRGLAGTRTL

Arabidopsis Description

Nuclease [Source:UniProtKB/TrEMBL;Acc:Q84J48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.