Factsheet for VIT_07s0005g06420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045523	Potato	cytosol	71.84	72.63
Solyc09g061310.2.1	Tomato	cytosol	71.84	72.1
KRG99787	Soybean	cytosol	70.76	70.25
GSMUA_Achr5P12910_001	Banana	cytosol	63.54	69.84
AT3G07090.1	Thale cress	cytosol	66.43	69.43
Bra040360.1-P	Field mustard	cytosol	60.29	69.01
KRH46754	Soybean	cytosol	69.31	68.57
CDY66750	Canola	cytosol	60.29	67.61
Bra029621.1-P	Field mustard	cytosol	66.79	67.52
CDY34915	Canola	cytosol	60.29	67.34
Os10t0472400-01	Rice	cytosol	58.12	55.33
GSMUA_Achr4P26480_001	Banana	cytosol, mitochondrion, plasma membrane	62.09	55.31
CDY05315	Canola	mitochondrion	64.26	55.11
CDY65594	Canola	cytosol, extracellular, plastid	19.86	53.4
CDX82731	Canola	cytosol, extracellular, plastid	11.55	53.33
KXG38351	Sorghum	mitochondrion	59.93	49.4
Zm00001d014043_P001	Maize	mitochondrion	56.32	48.45
CDY65492	Canola	cytosol	16.61	45.1
TraesCS1B01G169200.1	Wheat	mitochondrion	54.15	36.06
TraesCS1D01G148600.1	Wheat	mitochondrion	53.07	34.59
HORVU1Hr1G040180.1	Barley	cytosol, nucleus	34.3	34.3
TraesCS1A01G151600.1	Wheat	mitochondrion	50.9	33.25
HORVU1Hr1G040160.10	Barley	cytosol, nucleus	54.51	27.21

Protein Annotations

EntrezGene:100249956	wikigene:100249956	MapMan:19.2.3.2.5	MapMan:19.4.1.7	Gene3D:3.90.1720.30	ProteinID:CCB60281
ProteinID:CCB60281.1	UniProt:F6I015	EMBL:FN596502	EntrezGene:LOC100249956	wikigene:LOC100249956	PFAM:PF05903
InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF16	SMART:SM01179	TIGR:TC67837	UniParc:UPI0001985BFF
ArrayExpress:VIT_07s0005g06420	EnsemblPlantsGene:VIT_07s0005g06420	EnsemblPlants:VIT_07s0005g06420.t01	unigene:Vvi.11087	RefSeq:XP_002266333	RefSeq:XP_002266333.1
RefSeq:XP_002266369	RefSeq:XP_002266369.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:11573375..11577988

Molecular Weight (calculated)

29890.8 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.167

Length

277 amino acids

Sequence
(BLAST)

001: MAEEGHKVSL NVYDLSQGLA RQLSMTLLGK AIEGIWHTGI VVYGNEYYFG GGIQHSPAGT TPYGTPLRVI DLGVTHVPKD VFEMYLQEIS PRYTAETYSL
101: LKHNCNNFSN EVAQFLVGAT IPEYILELPN EVINSPMGAL ILPMIQQLET TLRAGAVPQV PQFKPSAMVQ PMPSANGSLN KSSDSCINEA ESNSKSEKQP
201: SKADVLVPPA VKPAVVKEKP AVSDPLGDAR SKVQEEISTE FAAIMATGTL RASEAAALAT KRVMQRYGHM NVATSQS

Best Arabidopsis Sequence Match ( AT3G07090.1 )
(BLAST)

001: MAEEAHKVTL NVYDLSQGLA RQLSQSLLGK VIEGVWHTGI VVYGNEYFFG GGIQHLPVGR TPYGTPIRTI ELGLSHVPKD VFEMYLEEIS PRYTAESYNL
101: LTHNCNNFSN EVAQFLVGKG IPDYILQLPN DVLNSPMGGL IMPMLQGLET TLKAGAVPQV PQFRPQPQPF GAFSKDDGPQ IVIAPKLEAA ETSTATEKVP
201: PVIQPSASKE KVKDDPLGDA RAKIQEEITS EFAALMAQGT LRASEAAAMA TKRVMQKYGH LNVNA

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SFT9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.