Factsheet for GSMUA_Achr4P26480_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12910_001	Banana	cytosol	63.99	78.97
VIT_07s0005g06420.t01	Wine grape	cytosol	55.31	62.09
PGSC0003DMT400045523	Potato	cytosol	54.34	61.68
Solyc09g061310.2.1	Tomato	cytosol	54.02	60.87
KRG99787	Soybean	cytosol	54.34	60.57
KRH46754	Soybean	cytosol	53.7	59.64
CDY66750	Canola	cytosol	46.95	59.11
Bra040360.1-P	Field mustard	cytosol	45.98	59.09
CDY34915	Canola	cytosol	46.62	58.47
Bra029621.1-P	Field mustard	cytosol	50.16	56.93
AT3G07090.1	Thale cress	cytosol	48.23	56.6
Os10t0472400-01	Rice	cytosol	49.84	53.26
KXG38351	Sorghum	mitochondrion	53.7	49.7
CDY05315	Canola	mitochondrion	50.48	48.61
Zm00001d014043_P001	Maize	mitochondrion	49.84	48.14
CDY65594	Canola	cytosol, extracellular, plastid	15.43	46.6
CDX82731	Canola	cytosol, extracellular, plastid	8.36	43.33
CDY65492	Canola	cytosol	13.18	40.2
HORVU1Hr1G040180.1	Barley	cytosol, nucleus	32.15	36.1
TraesCS1B01G169200.1	Wheat	mitochondrion	48.23	36.06
TraesCS1D01G148600.1	Wheat	mitochondrion	47.91	35.06
TraesCS1A01G151600.1	Wheat	mitochondrion	46.62	34.2
HORVU1Hr1G040160.10	Barley	cytosol, nucleus	47.59	26.67

Protein Annotations

EnsemblPlants:GSMUA_Achr4P26480_001	EnsemblPlants:GSMUA_Achr4T26480_001	EnsemblPlantsGene:GSMUA_Achr4G26480_001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF16	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI000295117C	UniProt:M0SSB0
MapMan:19.2.3.2.5	MapMan:19.4.1.7	:	:	:	:

Description

PPPDE peptidase domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G26480_001]

Coordinates

chr4:-:25770594..25773752

Molecular Weight (calculated)

33645.5 Da

IEP (calculated)

6.887

GRAVY (calculated)

-0.007

Length

311 amino acids

Sequence
(BLAST)

001: MDGPLLPILR EPRGNGPFKK ARSSHCIPVL FVASPPFAQI WLNLKLYSIY PGILGIWRDG FKVKLHVYDL SQGLARQLSA TFLGKAIEAV WHTGLVVYGK
101: EYYFSGGIQH DPAGKTPYGN PVRIVDLGVT HVPEEVFEEY LQEISPRYTG ATYSLLSHNC NNFSNEVAQF LVDTTIPDYI LRLPNEVMSS PMGALILPMI
201: QQLETTLKSG TVPQAPQFAP AAAVAAMPAA PSAVTSSPTT TDASVQATGK DNSLVAGDPL GEARNIVQEE IAREFTAIMA TGTLRASEAA ALAARRVMER
301: HGLVNAPMQR G

Best Arabidopsis Sequence Match ( AT3G07090.1 )
(BLAST)

001: MAEEAHKVTL NVYDLSQGLA RQLSQSLLGK VIEGVWHTGI VVYGNEYFFG GGIQHLPVGR TPYGTPIRTI ELGLSHVPKD VFEMYLEEIS PRYTAESYNL
101: LTHNCNNFSN EVAQFLVGKG IPDYILQLPN DVLNSPMGGL IMPMLQGLET TLKAGAVPQV PQFRPQPQPF GAFSKDDGPQ IVIAPKLEAA ETSTATEKVP
201: PVIQPSASKE KVKDDPLGDA RAKIQEEITS EFAALMAQGT LRASEAAAMA TKRVMQKYGH LNVNA

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SFT9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.