Factsheet for PGSC0003DMT400045523

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061310.2.1	Tomato	cytosol	95.99	95.29
VIT_07s0005g06420.t01	Wine grape	cytosol	72.63	71.84
KRG99787	Soybean	cytosol	71.17	69.89
GSMUA_Achr5P12910_001	Banana	cytosol	63.87	69.44
KRH46754	Soybean	cytosol	69.34	67.86
Bra040360.1-P	Field mustard	cytosol	58.76	66.53
CDY66750	Canola	cytosol	58.76	65.18
Bra029621.1-P	Field mustard	cytosol	64.96	64.96
CDY34915	Canola	cytosol	58.76	64.92
AT3G07090.1	Thale cress	cytosol	62.41	64.53
CDY65594	Canola	cytosol, extracellular, plastid	21.17	56.31
CDY05315	Canola	mitochondrion	64.6	54.8
GSMUA_Achr4P26480_001	Banana	cytosol, mitochondrion, plasma membrane	61.68	54.34
Os10t0472400-01	Rice	cytosol	57.66	54.3
CDX82731	Canola	cytosol, extracellular, plastid	11.68	53.33
KXG38351	Sorghum	mitochondrion	60.58	49.4
Zm00001d014043_P001	Maize	mitochondrion	56.2	47.83
CDY65492	Canola	cytosol	15.33	41.18
TraesCS1B01G169200.1	Wheat	mitochondrion	53.28	35.1
HORVU1Hr1G040180.1	Barley	cytosol, nucleus	35.4	35.02
TraesCS1D01G148600.1	Wheat	mitochondrion	52.19	33.65
TraesCS1A01G151600.1	Wheat	mitochondrion	51.09	33.02
HORVU1Hr1G040160.10	Barley	cytosol, nucleus	52.92	26.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400045523	EnsemblPlantsGene:PGSC0003DMG400017659	EntrezGene:102583887	Gene3D:3.90.1720.30	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF16
PFAM:PF05903	PGSC:PGSC0003DMG400017659	RefSeq:XP_006356767.1	SMART:SM01179	UniParc:UPI00029532DD	UniProt:M1BHT4
MapMan:19.2.3.2.5	MapMan:19.4.1.7	:	:	:	:

Description

Thioredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400017659]

Coordinates

chr9:+:44030615..44033853

Molecular Weight (calculated)

29540.1 Da

IEP (calculated)

5.949

GRAVY (calculated)

-0.236

Length

274 amino acids

Sequence
(BLAST)

001: MAEDGHKVIL NVYDLSQGLA RQLSTTFLGK AIEGIWHTGV VVYGHEYYFG GGIQHAPAGT TPYGTPVQVV DLGVTHIPKD VFEMYLQEIS PRYTAETYSL
101: LTHNCNNFSN EIAQFLVGAT IPDYILNLPN EVTNSPMGAL IMPMIQQLES TLRANAVPQA PQFRPATIAP ASQPTLSVGK SSSSGVYQSN KPESQDGEKK
201: NVPPAVKPVG EQEKTPANGV VKDPLGDARS KVQEEITREF AAIMATGTLR ASEAAALATK KVMQRYGDTF AAMN

Best Arabidopsis Sequence Match ( AT3G07090.1 )
(BLAST)

001: MAEEAHKVTL NVYDLSQGLA RQLSQSLLGK VIEGVWHTGI VVYGNEYFFG GGIQHLPVGR TPYGTPIRTI ELGLSHVPKD VFEMYLEEIS PRYTAESYNL
101: LTHNCNNFSN EVAQFLVGKG IPDYILQLPN DVLNSPMGGL IMPMLQGLET TLKAGAVPQV PQFRPQPQPF GAFSKDDGPQ IVIAPKLEAA ETSTATEKVP
201: PVIQPSASKE KVKDDPLGDA RAKIQEEITS EFAALMAQGT LRASEAAAMA TKRVMQKYGH LNVNA

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SFT9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.