CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040360.1-P	Field mustard	cytosol	95.14	97.11
CDY34915	Canola	cytosol	97.17	96.77
AT3G07090.1	Thale cress	cytosol	77.33	72.08
CDY65594	Canola	cytosol, extracellular, plastid	28.74	68.93
CDX82731	Canola	cytosol, extracellular, plastid	15.79	65.0
CDY05315	Canola	mitochondrion	83.81	64.09
GSMUA_Achr5P12910_001	Banana	cytosol	63.56	62.3
VIT_07s0005g06420.t01	Wine grape	cytosol	67.61	60.29
PGSC0003DMT400045523	Potato	cytosol	65.18	58.76
Solyc09g061310.2.1	Tomato	cytosol	64.78	57.97
KRH46754	Soybean	cytosol	65.59	57.86
KRG99787	Soybean	cytosol	64.78	57.35
CDY65492	Canola	cytosol	21.46	51.96
GSMUA_Achr4P26480_001	Banana	cytosol, mitochondrion, plasma membrane	59.11	46.95
Os10t0472400-01	Rice	cytosol	51.42	43.64
Zm00001d014043_P001	Maize	mitochondrion	53.04	40.68
KXG38351	Sorghum	mitochondrion	53.44	39.29
HORVU1Hr1G040180.1	Barley	cytosol, nucleus	35.22	31.41
TraesCS1B01G169200.1	Wheat	mitochondrion	48.99	29.09
TraesCS1D01G148600.1	Wheat	mitochondrion	48.18	28.0
TraesCS1A01G151600.1	Wheat	mitochondrion	47.37	27.59
HORVU1Hr1G040160.10	Barley	cytosol, nucleus	49.39	21.98

Protein Annotations

EnsemblPlants:CDY66750	EnsemblPlantsGene:GSBRNA2T00055672001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR12378	PANTHER:PTHR12378:SF16	PFAM:PF05903	ProteinID:CDY66750
ProteinID:CDY66750.1	SMART:SM01179	UniParc:UPI0004EE0CC6	UniProt:A0A078JJZ0	MapMan:19.2.3.2.5	MapMan:19.4.1.7

Description

BnaCnng52180DBnaCnng52180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJZ0]

Coordinates

chrLK035441:+:2899..4079

Molecular Weight (calculated)

26874.1 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.259

Length

247 amino acids

Sequence
(BLAST)

001: MCQEAHKVTL NVYDLSRGLA RQLSASLLGK VIEGVWHTGI VAYGNEYFFG GGIQHLPAGT TPYGAPLRSV EMGETHVPKD VFEIYLDEIS PRYTAESYNL
101: ITHNCNNFSN EVSQFLVGKG IPDYILQLPS EVMNSPMGGL LMPMIQNLEA TLRAGAVPNA PQFKPQSQPV GPNPSEKASE SPVVVQPSAS KEKVKEDPLG
201: DARTKIQEEI TREFASLMAQ GTLRASEAAT IATKRVMQKY GHLNVSA

Best Arabidopsis Sequence Match ( AT3G07090.1 )
(BLAST)

001: MAEEAHKVTL NVYDLSQGLA RQLSQSLLGK VIEGVWHTGI VVYGNEYFFG GGIQHLPVGR TPYGTPIRTI ELGLSHVPKD VFEMYLEEIS PRYTAESYNL
101: LTHNCNNFSN EVAQFLVGKG IPDYILQLPN DVLNSPMGGL IMPMLQGLET TLKAGAVPQV PQFRPQPQPF GAFSKDDGPQ IVIAPKLEAA ETSTATEKVP
201: PVIQPSASKE KVKDDPLGDA RAKIQEEITS EFAALMAQGT LRASEAAAMA TKRVMQKYGH LNVNA

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SFT9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.