Factsheet for VIT_06s0004g06590.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0208g00020.t01
VIT_04s0023g02130.t01
VIT_05s0077g02310.t01
VIT_05s0102g00080.t01
VIT_06s0061g00780.t01
VIT_07s0141g00610.t01
VIT_15s0045g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58720.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT5G58720.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT5G58720.1	VIT_00s0208g00020.t01	AT3G09630.1	21798944
AT5G58720.1	VIT_15s0045g00110.t01	AT3G09630.1	21798944
AT5G58720.1	VIT_05s0077g02310.t01	AT4G15900.1	10220464
AT5G58720.1	VIT_06s0061g00780.t01	AT5G22890.1	21798944
AT5G58720.1	VIT_04s0023g02130.t01	AT5G66460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	11.04	58.06
Zm00001d017254_P002	Maize	cytosol	16.16	50.97
CDX71154	Canola	nucleus	44.99	50.0
KRG98291	Soybean	nucleus	49.69	47.74
KRH30312	Soybean	nucleus	49.08	46.88
PGSC0003DMT400010646	Potato	nucleus	48.06	46.26
Solyc06g007110.2.1	Tomato	nucleus	48.06	46.17
CDY32688	Canola	nucleus	47.44	45.58
Bra006747.1-P	Field mustard	nucleus	45.4	44.67
CDY61025	Canola	nucleus	45.4	44.67
AT5G58720.1	Thale cress	nucleus	47.03	44.32
Bra020357.1-P	Field mustard	nucleus	47.03	43.98
CDY02832	Canola	nucleus	46.42	43.49
GSMUA_Achr7P14320_001	Banana	nucleus	30.88	34.95
TraesCS3B01G177300.1	Wheat	plastid	36.2	32.84
TraesCS3A01G150300.2	Wheat	plastid	38.45	31.86
OQU86087	Sorghum	nucleus	38.65	31.82
TraesCS3D01G158200.1	Wheat	plastid	37.63	31.19
HORVU3Hr1G030600.8	Barley	mitochondrion	38.24	27.18
Zm00001d039321_P008	Maize	nucleus	34.76	25.99
VIT_10s0597g00020.t01	Wine grape	cytosol	21.27	23.01
Os01t0225100-01	Rice	nucleus	12.47	21.63

Protein Annotations

EntrezGene:100248399	Gene3D:3.30.1370.110	MapMan:35.1	EMBL:AM486316	ProteinID:CAN79814	ProteinID:CAN79814.1
ProteinID:CBI15955	ProteinID:CBI15955.3	ncoils:Coil	UniProt:D7SJX9	InterPro:DUF1771	EMBL:FN594951
GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0016773	InterPro:IPR002625	PFAM:PF01713
PFAM:PF08590	PFscan:PS50828	PANTHER:PTHR13308	PANTHER:PTHR13308:SF22	SMART:SM00463	SMART:SM01162
SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	UniParc:UPI0001BE11E0	ArrayExpress:VIT_06s0004g06590	EnsemblPlantsGene:VIT_06s0004g06590
EnsemblPlants:VIT_06s0004g06590.t01	RefSeq:XP_010650901.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:7318656..7329811

Molecular Weight (calculated)

54331.8 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.677

Length

489 amino acids

Sequence
(BLAST)

001: MKPQKRRKKK GSRPRKPVGK EEGCEQEDEN RRDAGALMEA FGSVSVVEAA SAYREAEEDL NKAAEILGRL VLESSDDQTA TSSEGFVEAN CGEDLVNEKG
101: FKGGKKKKRV VAATGTVSTV LGKDYAVSKP PRRDLMKAKP VNKEEAEQFL CSMFGDECEL SMAVVRDVLC QCGYNFDKAL DALLVLSDSL HEPSMNSRCS
201: YSAKSKRDTR FLCSDNLTDG ASDSTSHSSE SELQDNARPL DHYFRNYAEV LASSETCSPS SPRISQLDPA QQVLEYLFNI PKSSEQEPST MNWRNVAKKM
301: ESLGQGFDFH RSGVVEPQPN SYAKGDEYQV YRKAANQQWD SVKSCYQKAA TAYSKGELTY AAYLSDQGKV QTKVAREADE KASQNIFEAR NKSIKNVITI
401: DLHGQHVKQA IRLLKIHLLF GVYVPSVKSL RVITGCGSHG VGKSKLKQSV INLMEKEGIE WSEENRGTVI IKLDGQRDFR FLESDGETE

Best Arabidopsis Sequence Match ( AT5G58720.1 )
(BLAST)

001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE

Arabidopsis Description

PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.