Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017254_P002 | Maize | cytosol | 16.97 | 71.61 |
| OQU86087 | Sorghum | nucleus | 64.53 | 71.04 |
| TraesCS3B01G177300.1 | Wheat | plastid | 46.94 | 56.96 |
| TraesCS3D01G158200.1 | Wheat | plastid | 50.92 | 56.44 |
| TraesCS3A01G150300.2 | Wheat | plastid | 50.46 | 55.93 |
| Os01t0225100-01 | Rice | nucleus | 23.7 | 54.96 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 50.0 | 47.53 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 5.96 | 41.94 |
| CDX71154 | Canola | nucleus | 24.62 | 36.59 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 24.01 | 36.34 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 25.99 | 34.76 |
| CDY61025 | Canola | nucleus | 26.3 | 34.61 |
| Bra006747.1-P | Field mustard | nucleus | 26.3 | 34.61 |
| CDY32688 | Canola | nucleus | 26.45 | 33.99 |
| Bra020357.1-P | Field mustard | nucleus | 27.06 | 33.84 |
| KRG98291 | Soybean | nucleus | 25.84 | 33.2 |
| CDY02832 | Canola | nucleus | 26.15 | 32.76 |
| AT5G58720.1 | Thale cress | nucleus | 25.54 | 32.18 |
| KRH30312 | Soybean | nucleus | 24.77 | 31.64 |
| PGSC0003DMT400010646 | Potato | nucleus | 24.16 | 31.1 |
| Solyc06g007110.2.1 | Tomato | nucleus | 24.01 | 30.84 |
| Zm00001d051245_P001 | Maize | nucleus | 16.51 | 21.64 |
Protein Annotations
| EnsemblPlants:Zm00001d039321_P008 | EnsemblPlants:Zm00001d039321_T008 | EnsemblPlantsGene:Zm00001d039321 | Gene3D:3.30.1370.110 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:DUF1771 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF08590 | ProteinID:ONM28319.1 |
| SEG:seg | SMART:SM01162 | TMHMM:TMhelix | UniParc:UPI0008451584 | UniProt:A0A1D6MFA8 | MapMan:35.1 |
Description
SMR domain-containing protein
Coordinates
chr3:-:1752610..1773507
Molecular Weight (calculated)
71025.3 Da
IEP (calculated)
6.561
GRAVY (calculated)
-0.487
Length
654 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPSLSKKKG KKKKKSSLPA AAPAPPPAEG AADTEACPPL PGTITLTAAT AAAAVVSETE SSSSGEASTC PSACFTASSS GTASSHSFSA LSSSASTASS
101: SAAGEERRDL TWLLDAFASA TFDQIDSAYR EAGGDPFVAA GILSSTQDTH PPQPPQPAPQ PPPPPDLSPR SGSGGRKAGR RPKRVAVAAT GMVADVIGKE
201: YTRPAANSVV SMPNAWKGRD GESDGSGSGG RKDSVEEAEQ FLCSMLGDNS ELGMGVVRDV LGQYGYDVEK ALDALLDISG VSSVENMETN HQSARRNDTC
301: HLDMFSGNGL SVENLTAGNR RSLRQLTDEI SNTGLQSELG HEFLWGEPQI SDYEGCQIEV QVSSEPIPPI RYAEAVKEAP RSSTLPSRST VMKAGPQQVL
401: DSLFKIPETR TYEPSSMDWK KVVKKLQTIN YTAASNNHER PKDGGGYREL RGVAARHYDK MKEYYQKAAF AYSKGDRSYA SYLAEEGKHY RELGRIEDEK
501: ASRNIFEARN KHITNTVTID LHGQHVQHAM NLLKIHMMIC ICIPCEYHTR FGAVVSASAL IHATQLSVFY LMLYCAFFVR YREGKNKALG LNNVLVVELL
601: KCKWWQVIEL AEKEHIEWRE ENSGTVALRL GGPREYRFLE HESDSDLVGN FNID
101: SAAGEERRDL TWLLDAFASA TFDQIDSAYR EAGGDPFVAA GILSSTQDTH PPQPPQPAPQ PPPPPDLSPR SGSGGRKAGR RPKRVAVAAT GMVADVIGKE
201: YTRPAANSVV SMPNAWKGRD GESDGSGSGG RKDSVEEAEQ FLCSMLGDNS ELGMGVVRDV LGQYGYDVEK ALDALLDISG VSSVENMETN HQSARRNDTC
301: HLDMFSGNGL SVENLTAGNR RSLRQLTDEI SNTGLQSELG HEFLWGEPQI SDYEGCQIEV QVSSEPIPPI RYAEAVKEAP RSSTLPSRST VMKAGPQQVL
401: DSLFKIPETR TYEPSSMDWK KVVKKLQTIN YTAASNNHER PKDGGGYREL RGVAARHYDK MKEYYQKAAF AYSKGDRSYA SYLAEEGKHY RELGRIEDEK
501: ASRNIFEARN KHITNTVTID LHGQHVQHAM NLLKIHMMIC ICIPCEYHTR FGAVVSASAL IHATQLSVFY LMLYCAFFVR YREGKNKALG LNNVLVVELL
601: KCKWWQVIEL AEKEHIEWRE ENSGTVALRL GGPREYRFLE HESDSDLVGN FNID
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.