Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85378 | Sorghum | cytosol | 77.76 | 77.6 |
| Os02t0639700-01 | Rice | nucleus | 61.32 | 62.7 |
| TraesCS2D01G415100.1 | Wheat | nucleus | 64.73 | 61.29 |
| TraesCS2A01G417900.3 | Wheat | nucleus | 64.73 | 61.17 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 64.53 | 61.1 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 31.46 | 55.87 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 38.28 | 38.59 |
| CDY20114 | Canola | nucleus | 27.45 | 28.78 |
| Bra027247.1-P | Field mustard | nucleus | 27.86 | 28.78 |
| CDX97665 | Canola | nucleus | 27.86 | 28.78 |
| CDY21839 | Canola | nucleus | 27.05 | 28.42 |
| Zm00001d017254_P002 | Maize | cytosol | 8.82 | 28.39 |
| Bra021108.1-P | Field mustard | nucleus | 27.05 | 28.36 |
| AT3G15390.1 | Thale cress | nucleus | 27.66 | 28.16 |
| CDX98557 | Canola | nucleus | 27.25 | 27.53 |
| VIT_10s0597g00020.t01 | Wine grape | cytosol | 24.05 | 26.55 |
| Solyc07g063240.2.1 | Tomato | cytosol | 26.45 | 25.43 |
| KRH21455 | Soybean | vacuole | 26.45 | 25.14 |
| PGSC0003DMT400032412 | Potato | cytosol | 26.05 | 23.72 |
| Zm00001d039321_P008 | Maize | nucleus | 21.64 | 16.51 |
Protein Annotations
| EnsemblPlants:Zm00001d051245_P001 | EnsemblPlants:Zm00001d051245_T001 | EnsemblPlantsGene:Zm00001d051245 | InterPro:DUF1771 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 |
| PFAM:PF08590 | ProteinID:AQK53894.1 | SEG:seg | SMART:SM01162 | UniParc:UPI0008441E30 | UniProt:A0A1D6Q5U4 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative nuclear RNA export factor SDE5
Coordinates
chr4:+:150310448..150317777
Molecular Weight (calculated)
56958.2 Da
IEP (calculated)
5.737
GRAVY (calculated)
-0.770
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSQALTSS SDDETRALGT LLDMFSSSFS LDDIADAYIK ANGDVNKAGD FLYDLQHSLP HTKDVESSVE ANLSHTDKAV EENCMDNSSQ PRTLLRTEQA
101: VEENHFENSD HTKMPENLHK SSAAFGTVSS MLRKESIRAT TTASRASKKG KPLRVELPEY MRDDFKVTSD ESDSAPRRET LNNRDVEEFL FCMLGEGFKL
201: SKELIHEVLG SCGYDIKKSM EELMSFSEKD LDKKAESKHN AIQDLAVECS VPKGSCLGSQ SIEGMQRSKP KISAEEVIEA IFTVPERLEE EPKLKRYGLG
301: ANRNRVPHQK PVLKPLEDVP TYSTEFPINI IIGSKAPSMN EDEYQNYRRA AKQHWFMMKQ YYEKAADAFR EGNQKEVDYL IQEGKRYYQM ARLADEKSAR
401: EIIKPRETES KNEFCLDLRK QDAGNVSNLL RLHLKQLANI PSFDYLRVII GIDDSSFKMG QRRRKVMKYV EKNSLQWTEE EPRSGNILIR INQVENRQG
101: VEENHFENSD HTKMPENLHK SSAAFGTVSS MLRKESIRAT TTASRASKKG KPLRVELPEY MRDDFKVTSD ESDSAPRRET LNNRDVEEFL FCMLGEGFKL
201: SKELIHEVLG SCGYDIKKSM EELMSFSEKD LDKKAESKHN AIQDLAVECS VPKGSCLGSQ SIEGMQRSKP KISAEEVIEA IFTVPERLEE EPKLKRYGLG
301: ANRNRVPHQK PVLKPLEDVP TYSTEFPINI IIGSKAPSMN EDEYQNYRRA AKQHWFMMKQ YYEKAADAFR EGNQKEVDYL IQEGKRYYQM ARLADEKSAR
401: EIIKPRETES KNEFCLDLRK QDAGNVSNLL RLHLKQLANI PSFDYLRVII GIDDSSFKMG QRRRKVMKYV EKNSLQWTEE EPRSGNILIR INQVENRQG
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.