Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032412 | Potato | cytosol | 94.03 | 89.05 |
| CDY21839 | Canola | nucleus | 32.37 | 35.37 |
| CDX98557 | Canola | nucleus | 33.33 | 35.02 |
| Bra027247.1-P | Field mustard | nucleus | 32.56 | 34.99 |
| CDX97665 | Canola | nucleus | 32.56 | 34.99 |
| Bra021108.1-P | Field mustard | nucleus | 31.21 | 34.03 |
| AT3G15390.1 | Thale cress | nucleus | 31.79 | 33.67 |
| CDY20114 | Canola | nucleus | 30.83 | 33.61 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 31.02 | 32.53 |
| Os02t0639700-01 | Rice | nucleus | 26.01 | 27.66 |
| Zm00001d051245_P001 | Maize | nucleus | 25.43 | 26.45 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 26.4 | 26.0 |
| TraesCS2D01G415100.1 | Wheat | nucleus | 26.4 | 26.0 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 14.07 | 25.98 |
| TraesCS2A01G417900.3 | Wheat | nucleus | 26.01 | 25.57 |
| OQU85378 | Sorghum | cytosol | 24.28 | 25.2 |
| HORVU2Hr1G098380.15 | Barley | cytosol, nucleus, plastid | 11.95 | 24.41 |
| Solyc06g007110.2.1 | Tomato | nucleus | 20.62 | 21.02 |
| TraesCS2B01G206400.1 | Wheat | mitochondrion | 18.88 | 11.36 |
Protein Annotations
| EnsemblPlants:Solyc07g063240.2.1 | EnsemblPlantsGene:Solyc07g063240.2 | InterPro:DUF1771 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 | PFAM:PF08590 |
| SMART:SM01162 | UniParc:UPI000276BC41 | UniProt:K4CH07 | MapMan:35.1 | : | : |
Description
Putative nuclear RNA export factor SDE5 [Source:Projected from Arabidopsis thaliana (AT3G15390) UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
Coordinates
chr7:-:65755895..65765336
Molecular Weight (calculated)
57548.4 Da
IEP (calculated)
4.736
GRAVY (calculated)
-0.419
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMEAPPSTI LFTDDDSKNL EQLLDVFGSV VSLDDIAAAY CKAGRDPIIA GDILGDQKPS SSGTTNSEME ENIEDSVTLT SEFEEVGDSM ISTSASVSEI
101: DAKRVGPRSS KQKKLSVSMG TVSSMIPKDY LTNRPLITET STRIKPLKLS ADDFLTPELR EEKAPLGAAA MSETLPSSVE EFLFNMLGSG FSLDRSVIGD
201: VVGQCSYDLN KSMDKLLDMS ASTLGKSDDI INIGVKKSVE SSDFASVVSK ETSSMTDPAI RSKANEKTKN GLKLSMKEQE RYEIQKEVLH ALFDVPAASR
301: YDNVDEVIRP VKEVGKSSRL NLVVDKPLQE TLERQILIRT PQSDAKNGEE DEESYEVLRK AVKEYWITMK EYYNAASEAF SKGDHDQARK FLEEGQFFMT
401: KAQVTDEKSS QKLLETSCSS SKEIVTLDLH DLEPKDAVRL LKLQLTSLCG FSSIQYLKIL VGITAEEAKG PRKRLVLKFL ERDSIPWTEE ENGTVLVIRV
501: DVIDPRKMTF AKKSTARVR
101: DAKRVGPRSS KQKKLSVSMG TVSSMIPKDY LTNRPLITET STRIKPLKLS ADDFLTPELR EEKAPLGAAA MSETLPSSVE EFLFNMLGSG FSLDRSVIGD
201: VVGQCSYDLN KSMDKLLDMS ASTLGKSDDI INIGVKKSVE SSDFASVVSK ETSSMTDPAI RSKANEKTKN GLKLSMKEQE RYEIQKEVLH ALFDVPAASR
301: YDNVDEVIRP VKEVGKSSRL NLVVDKPLQE TLERQILIRT PQSDAKNGEE DEESYEVLRK AVKEYWITMK EYYNAASEAF SKGDHDQARK FLEEGQFFMT
401: KAQVTDEKSS QKLLETSCSS SKEIVTLDLH DLEPKDAVRL LKLQLTSLCG FSSIQYLKIL VGITAEEAKG PRKRLVLKFL ERDSIPWTEE ENGTVLVIRV
501: DVIDPRKMTF AKKSTARVR
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.