Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051245_P001 | Maize | nucleus | 77.6 | 77.76 |
| Os02t0639700-01 | Rice | nucleus | 63.0 | 64.55 |
| TraesCS2D01G415100.1 | Wheat | nucleus | 62.0 | 58.82 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 61.8 | 58.63 |
| TraesCS2A01G417900.3 | Wheat | nucleus | 61.6 | 58.33 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 26.4 | 46.98 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 38.6 | 38.99 |
| Bra027247.1-P | Field mustard | nucleus | 27.0 | 27.95 |
| CDX97665 | Canola | nucleus | 27.0 | 27.95 |
| AT3G15390.1 | Thale cress | nucleus | 27.2 | 27.76 |
| CDY20114 | Canola | nucleus | 26.0 | 27.31 |
| Bra021108.1-P | Field mustard | nucleus | 25.6 | 26.89 |
| CDY21839 | Canola | nucleus | 25.4 | 26.74 |
| CDX98557 | Canola | nucleus | 26.4 | 26.72 |
| VIT_10s0597g00020.t01 | Wine grape | cytosol | 23.0 | 25.44 |
| KRH21455 | Soybean | vacuole | 26.2 | 24.95 |
| Solyc07g063240.2.1 | Tomato | cytosol | 25.2 | 24.28 |
| PGSC0003DMT400032412 | Potato | cytosol | 25.4 | 23.18 |
| OQU86087 | Sorghum | nucleus | 22.2 | 18.69 |
Protein Annotations
| EnsemblPlants:OQU85378 | EnsemblPlantsGene:SORBI_3004G228000 | InterPro:DUF1771 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 | PFAM:PF08590 |
| ProteinID:OQU85378 | ProteinID:OQU85378.1 | SMART:SM01162 | UniParc:UPI000B426D16 | UniProt:A0A1Z5RNU6 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr4:+:57755939..57762497
Molecular Weight (calculated)
56809.3 Da
IEP (calculated)
5.642
GRAVY (calculated)
-0.723
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSHAMTSS SDDETRALST LLDVFSCAFS LDDIADAYIK ANGDVNKAGD FLTDLQLTLP HINDVRSSVE TNLSHTDKAV QENCTDNSSR PKTLPWTEQA
101: VEEKHIENSD QTKMPEKLHK SSAAFGTVSS MLGKEPTRAA TTVSRASRKD KPLRVELPEY MRDDFKMKSD ESDSAPRRET LNDRDVEEFL FCMLGEGFKL
201: SMELIREVLG SCGYDIKKSM EELMSFYEKD PDKKAEGKHN TIKDVAVECS VPKGRCLGSQ SIVGMQRSKP KISPGEVIEA IFTVPDRLEE EPKLKRYELG
301: ANRNRVPYQK PVLKPLEDIS TYSTEIPVKI IVGSKASSVN EEEYQNYRRA AKQHWDMMKQ YYEKAADAFR EGNQKEVDYL IQEGKRCYQM ARLADEKSAG
401: EIIKPKETES KNEFCLDLRK QDAANVSNLL RLHLKQLANI PSFDYLKVII GVDDGSFKMG QKRRKVMKYV EKNSFQWTEE EPLSGTILIR INNQVENQQG
101: VEEKHIENSD QTKMPEKLHK SSAAFGTVSS MLGKEPTRAA TTVSRASRKD KPLRVELPEY MRDDFKMKSD ESDSAPRRET LNDRDVEEFL FCMLGEGFKL
201: SMELIREVLG SCGYDIKKSM EELMSFYEKD PDKKAEGKHN TIKDVAVECS VPKGRCLGSQ SIVGMQRSKP KISPGEVIEA IFTVPDRLEE EPKLKRYELG
301: ANRNRVPYQK PVLKPLEDIS TYSTEIPVKI IVGSKASSVN EEEYQNYRRA AKQHWDMMKQ YYEKAADAFR EGNQKEVDYL IQEGKRCYQM ARLADEKSAG
401: EIIKPKETES KNEFCLDLRK QDAANVSNLL RLHLKQLANI PSFDYLKVII GVDDGSFKMG QKRRKVMKYV EKNSFQWTEE EPLSGTILIR INNQVENQQG
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.