Factsheet for AT3G15390.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20114	Canola	nucleus	69.39	71.43
Bra021108.1-P	Field mustard	nucleus	68.78	70.8
Bra027247.1-P	Field mustard	nucleus	69.18	70.19
CDX97665	Canola	nucleus	69.18	70.19
CDY21839	Canola	nucleus	67.55	69.68
CDX98557	Canola	nucleus	66.53	65.99
Solyc07g063240.2.1	Tomato	cytosol	33.67	31.79
GSMUA_Achr4P26110_001	Banana	cytosol	32.04	31.72
PGSC0003DMT400032412	Potato	cytosol	34.29	30.66
Zm00001d051245_P001	Maize	nucleus	28.16	27.66
HORVU2Hr1G098380.15	Barley	cytosol, nucleus, plastid	14.29	27.56
OQU85378	Sorghum	cytosol	27.76	27.2
Os02t0639700-01	Rice	nucleus	26.94	27.05
TraesCS2B01G436800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.57	26.57
TraesCS2D01G415100.1	Wheat	nucleus	28.57	26.57
TraesCS2A01G417900.3	Wheat	nucleus	28.57	26.52
HORVU2Hr1G098290.4	Barley	cytosol, nucleus	14.69	25.62
AT5G58720.1	Thale cress	nucleus	22.24	21.0
TraesCS2B01G206400.1	Wheat	mitochondrion	17.96	10.2

Protein Annotations

MapMan:35.1	EntrezGene:820778	ProteinID:AAF35405.1	ProteinID:AEE75662.1	ArrayExpress:AT3G15390	EnsemblPlantsGene:AT3G15390
RefSeq:AT3G15390	TAIR:AT3G15390	RefSeq:AT3G15390-TAIR-G	EnsemblPlants:AT3G15390.1	TAIR:AT3G15390.1	Unigene:At.49625
ProteinID:BAB02368.1	InterPro:DUF1771	GO:GO:0006139	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010267	GO:GO:0031047	GO:GO:0040029	RefSeq:NP_188158.4
PFAM:PF08590	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PANTHER:PTHR13308
PANTHER:PTHR13308:SF37	UniProt:Q9LUQ3	Symbol:SDE5	SMART:SM01162	UniParc:UPI00000A3882	SEG:seg

Description

SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]

Coordinates

chr3:-:5196607..5200394

Molecular Weight (calculated)

55165.0 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.763

Length

490 amino acids

Sequence
(BLAST)

001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.