Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97665 | Canola | nucleus | 89.88 | 91.93 |
| CDY21839 | Canola | nucleus | 73.08 | 76.0 |
| CDY20114 | Canola | nucleus | 71.46 | 74.16 |
| AT3G15390.1 | Thale cress | nucleus | 65.99 | 66.53 |
| Solyc07g063240.2.1 | Tomato | cytosol | 35.02 | 33.33 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 32.59 | 32.53 |
| PGSC0003DMT400032412 | Potato | cytosol | 35.22 | 31.75 |
| HORVU2Hr1G098380.15 | Barley | cytosol, nucleus, plastid | 15.18 | 29.53 |
| Os02t0639700-01 | Rice | nucleus | 27.53 | 27.87 |
| Zm00001d051245_P001 | Maize | nucleus | 27.53 | 27.25 |
| TraesCS2A01G417900.3 | Wheat | nucleus | 28.95 | 27.08 |
| TraesCS2D01G415100.1 | Wheat | nucleus | 28.74 | 26.95 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.54 | 26.76 |
| OQU85378 | Sorghum | cytosol | 26.72 | 26.4 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 13.77 | 24.2 |
| CDX71154 | Canola | nucleus | 19.23 | 21.59 |
| CDY61025 | Canola | nucleus | 19.23 | 19.11 |
| CDY02832 | Canola | nucleus | 20.04 | 18.97 |
| CDY32688 | Canola | nucleus | 19.43 | 18.86 |
| TraesCS2B01G206400.1 | Wheat | mitochondrion | 19.64 | 11.24 |
Protein Annotations
| EnsemblPlants:CDX98557 | EnsemblPlantsGene:GSBRNA2T00106214001 | InterPro:DUF1771 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 | PFAM:PF08590 |
| ProteinID:CDX98557 | ProteinID:CDX98557.1 | SEG:seg | SMART:SM01162 | UniParc:UPI0004EE9C16 | MapMan:35.1 |
Description
BnaC05g38180D
Coordinates
chrLK031905:-:998559..1002203
Molecular Weight (calculated)
55300.0 Da
IEP (calculated)
5.208
GRAVY (calculated)
-0.675
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMLGSSSHS DPDSRSLQVL LDAFGSRFSL DDIAAAYCQA SQNVHEAGEI LFAMTTKEAP QSDQVKTNGA TSKPTHVYVP KKVQTQENDS NAAKVWRPKK
101: SSVSVGTVSS VIGKEYARRS MPESNARQEA VKPMKIDARD IPETEIWSEE ELPRSNEANV SRAPTDVEEF IAKMLGEGFQ ASPEVIQQIL GVCGYDVMKW
201: YLYSSWHMAP STEKLLDLSD TKKHADVGIS NEVTSKVDPQ SSGEARTLTG SQEGGKNNSG LEKEVLEALF SGVERYEEVP KVTRRFGERR ARVAGRLVFE
301: PLEDTFEERV VTMIQSTNTS KEDEDDENEY KAHRKAVHEN LQEMKEYYGA AVEAFSKGET ERARRLVEKG HFFGQKAREA DDKSVAKMLE LKEDDGSAYK
401: EDEVVTVNVN EHEPREALRL LKLQLRNFSG IPSIKYLRVK LGDNKEDSKC KRRLTAIAKL LAGDSIAWSE EDNGLVMMIR VDEVIPEKLS FAKK
101: SSVSVGTVSS VIGKEYARRS MPESNARQEA VKPMKIDARD IPETEIWSEE ELPRSNEANV SRAPTDVEEF IAKMLGEGFQ ASPEVIQQIL GVCGYDVMKW
201: YLYSSWHMAP STEKLLDLSD TKKHADVGIS NEVTSKVDPQ SSGEARTLTG SQEGGKNNSG LEKEVLEALF SGVERYEEVP KVTRRFGERR ARVAGRLVFE
301: PLEDTFEERV VTMIQSTNTS KEDEDDENEY KAHRKAVHEN LQEMKEYYGA AVEAFSKGET ERARRLVEKG HFFGQKAREA DDKSVAKMLE LKEDDGSAYK
401: EDEVVTVNVN EHEPREALRL LKLQLRNFSG IPSIKYLRVK LGDNKEDSKC KRRLTAIAKL LAGDSIAWSE EDNGLVMMIR VDEVIPEKLS FAKK
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.