Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61025 | Canola | nucleus | 90.23 | 79.88 |
| CDY32688 | Canola | nucleus | 74.09 | 64.05 |
| AT5G58720.1 | Thale cress | nucleus | 75.0 | 63.58 |
| CDY02832 | Canola | nucleus | 75.0 | 63.22 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 11.82 | 55.91 |
| Zm00001d017254_P002 | Maize | cytosol | 15.91 | 45.16 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 50.0 | 44.99 |
| KRH30312 | Soybean | nucleus | 48.18 | 41.41 |
| KRG98291 | Soybean | nucleus | 46.82 | 40.47 |
| PGSC0003DMT400010646 | Potato | nucleus | 45.91 | 39.76 |
| Solyc06g007110.2.1 | Tomato | nucleus | 45.23 | 39.1 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 30.68 | 31.25 |
| TraesCS3B01G177300.1 | Wheat | plastid | 37.73 | 30.8 |
| TraesCS3A01G150300.2 | Wheat | plastid | 39.77 | 29.66 |
| OQU86087 | Sorghum | nucleus | 40.0 | 29.63 |
| TraesCS3D01G158200.1 | Wheat | plastid | 39.32 | 29.32 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 40.0 | 25.58 |
| Zm00001d039321_P008 | Maize | nucleus | 36.59 | 24.62 |
| CDY20114 | Canola | nucleus | 23.41 | 21.64 |
| CDY21839 | Canola | nucleus | 22.73 | 21.05 |
| CDX97665 | Canola | nucleus | 22.05 | 20.08 |
| CDX98557 | Canola | nucleus | 21.59 | 19.23 |
| Os01t0225100-01 | Rice | nucleus | 11.59 | 18.09 |
Protein Annotations
| EnsemblPlants:CDX71154 | EnsemblPlantsGene:GSBRNA2T00141121001 | Gene3D:3.30.1370.110 | InterPro:DUF1771 | InterPro:IPR002625 | InterPro:Smr_dom |
| InterPro:Smr_dom_sf | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF01713 | PFAM:PF08590 | PFscan:PS50828 |
| ProteinID:CDX71154 | ProteinID:CDX71154.1 | SEG:seg | SMART:SM00463 | SMART:SM01162 | SUPFAM:SSF160443 |
| UniParc:UPI0004EEE888 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g12380D
Coordinates
chrLK031791:+:3898292..3901208
Molecular Weight (calculated)
47943.9 Da
IEP (calculated)
5.392
GRAVY (calculated)
-0.587
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAFCSVSRE EATSAYKEAA GDLNKAAELL TDLVENGDDP STSSGQETGS TSEESLFKGG RSKQSRVIAA TGMVSSVIAK DYLKPKKEFP SFVERSKELS
101: GKKAGDREKS EQFLTSMLGD DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSSTNDDS LSGRCSGIGF SDSLADTSFD TDTSESEPSF WGGYSPRDYS
201: KALMSDPFAT RQGSCEPFHP QKVLESLFNI PQSTKHEPKT MSWRNVAKKM QSLGIDASSS SGEGSQPENY GKDDGYHELR KGANDQWNVT KSYYQKAAEA
301: YSKGGRAHAA YLSDKGRAAS KLAQRADERA SQDIFVARNK GIENVITIDL HGQHVKQAMK LLKMHLLLGA YVPSIQTLRV ITGCGSHGFG KSKVKQSVTK
401: LLEREGVGYC EENRGTLLIK LEGCSREFSF LDTETDSDLS
101: GKKAGDREKS EQFLTSMLGD DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSSTNDDS LSGRCSGIGF SDSLADTSFD TDTSESEPSF WGGYSPRDYS
201: KALMSDPFAT RQGSCEPFHP QKVLESLFNI PQSTKHEPKT MSWRNVAKKM QSLGIDASSS SGEGSQPENY GKDDGYHELR KGANDQWNVT KSYYQKAAEA
301: YSKGGRAHAA YLSDKGRAAS KLAQRADERA SQDIFVARNK GIENVITIDL HGQHVKQAMK LLKMHLLLGA YVPSIQTLRV ITGCGSHGFG KSKVKQSVTK
401: LLEREGVGYC EENRGTLLIK LEGCSREFSF LDTETDSDLS
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.