Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 34.95 | 30.88 |
| CDX71154 | Canola | nucleus | 31.25 | 30.68 |
| Bra006747.1-P | Field mustard | nucleus | 33.8 | 29.38 |
| CDY61025 | Canola | nucleus | 33.8 | 29.38 |
| Os01t0225100-01 | Rice | nucleus | 18.98 | 29.08 |
| PGSC0003DMT400010646 | Potato | nucleus | 33.56 | 28.54 |
| Solyc06g007110.2.1 | Tomato | nucleus | 33.56 | 28.49 |
| OQU86087 | Sorghum | nucleus | 39.12 | 28.45 |
| Bra020357.1-P | Field mustard | nucleus | 34.03 | 28.11 |
| CDY32688 | Canola | nucleus | 33.1 | 28.09 |
| TraesCS3B01G177300.1 | Wheat | plastid | 34.72 | 27.83 |
| CDY02832 | Canola | nucleus | 33.33 | 27.59 |
| KRG98291 | Soybean | nucleus | 32.41 | 27.5 |
| KRH30312 | Soybean | nucleus | 31.94 | 26.95 |
| TraesCS3A01G150300.2 | Wheat | plastid | 36.57 | 26.78 |
| AT5G58720.1 | Thale cress | nucleus | 31.71 | 26.4 |
| TraesCS3D01G158200.1 | Wheat | plastid | 35.88 | 26.27 |
| Zm00001d039321_P008 | Maize | nucleus | 36.34 | 24.01 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 36.34 | 22.82 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 25.0 | 21.82 |
| Zm00001d017254_P002 | Maize | cytosol | 4.63 | 12.9 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 0.23 | 1.08 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P14320_001 | EnsemblPlants:GSMUA_Achr7T14320_001 | EnsemblPlantsGene:GSMUA_Achr7G14320_001 | InterPro:DUF1771 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 |
| PFAM:PF08590 | SEG:seg | SMART:SM01162 | UniParc:UPI000294E4F6 | UniProt:M0THG9 | MapMan:35.1 |
Description
Putative smr domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G14320_001]
Coordinates
chr7:-:11485170..11493724
Molecular Weight (calculated)
47659.8 Da
IEP (calculated)
7.951
GRAVY (calculated)
-0.738
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPSTKKRSR KKKRKPAPAP GSDPAKEEEA AASAAEILVN GGSDDEQKRA LNWLIDAFTS VSVDQIASAY REAGGDPFKA AGILGARLDD PAVGPAGGRE
101: AMGSGNGFGG SRRHKRVAAA TGMVSDVIGK GYSGCGRRNK DRIVTNLQSK GCMNRMYKVE EAEQFLCSML GDESELGMGV VTDVLDQCGC DIEKALEVLL
201: DISASSCNKL KEKESQNRGI PRTNYSYTCP ETSSNDHPKN TINSFQLRDR TSDSAYHLSE KEHVFQPFVG YSNREHGLVL ADNEVPLPSK SEQSKPALQQ
301: KVLESLFNIP NSPKHESNCM NWKKVVTKVE SFGQGLEFCS SSTEDTQSNA AYGKEDDYQV FRGVSKKHWD KMRTYYQEAA MAYSRGERAH ASYLSEKGKL
401: YRDIAREADE KASREIFETR QAHALINSFL FQ
101: AMGSGNGFGG SRRHKRVAAA TGMVSDVIGK GYSGCGRRNK DRIVTNLQSK GCMNRMYKVE EAEQFLCSML GDESELGMGV VTDVLDQCGC DIEKALEVLL
201: DISASSCNKL KEKESQNRGI PRTNYSYTCP ETSSNDHPKN TINSFQLRDR TSDSAYHLSE KEHVFQPFVG YSNREHGLVL ADNEVPLPSK SEQSKPALQQ
301: KVLESLFNIP NSPKHESNCM NWKKVVTKVE SFGQGLEFCS SSTEDTQSNA AYGKEDDYQV FRGVSKKHWD KMRTYYQEAA MAYSRGERAH ASYLSEKGKL
401: YRDIAREADE KASREIFETR QAHALINSFL FQ
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPCEYLANS IISLFFFSRS S
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPCEYLANS IISLFFFSRS S
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.