Factsheet for GSMUA_Achr9P10710_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P08690_001
GSMUA_Achr1P08716_001
GSMUA_Achr1P11070_001
GSMUA_Achr2P20290_001
GSMUA_Achr3P18940_001
GSMUA_Achr4P33210_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P00390_001
GSMUA_Achr8P16080_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT2G30580.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944
AT2G30580.1	GSMUA_AchrUn_...	AT2G46550.1	21798944
AT2G30580.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr1P11070_001	AT4G13540.1	21798944
AT2G30580.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT2G30580.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944
AT3G23060.1	GSMUA_Achr1P08690_001	AT5G45490.1	21798944
AT3G23060.1	GSMUA_Achr1P08716_001	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03230_001	Banana	nucleus	58.79	53.18
GSMUA_Achr8P18360_001	Banana	cytosol	11.31	52.33
GSMUA_Achr4P17750_001	Banana	nucleus	51.01	52.19
VIT_07s0141g00610.t01	Wine grape	nucleus	53.27	49.3
Solyc06g008600.2.1	Tomato	nucleus	51.26	48.8
Solyc09g065990.2.1	Tomato	nucleus	51.26	47.44
PGSC0003DMT400038984	Potato	nucleus	51.26	47.44
Bra022807.1-P	Field mustard	cytosol	8.29	47.14
KRG95629	Soybean	nucleus	50.0	46.5
AT2G30580.1	Thale cress	nucleus	48.99	46.43
VIT_14s0081g00070.t01	Wine grape	nucleus	51.76	45.88
KRH34095	Soybean	nucleus	49.75	45.83
CDY47131	Canola	nucleus	47.49	45.32
Solyc06g084040.2.1	Tomato	nucleus	48.99	45.24
CDY10748	Canola	nucleus	47.74	45.13
CDX97807	Canola	nucleus	46.98	44.95
GSMUA_Achr8P18370_001	Banana	mitochondrion, nucleus	37.44	44.88
KRG92687	Soybean	nucleus	48.74	44.8
CDY29659	Canola	nucleus	46.73	44.18
KRH67309	Soybean	nucleus	48.99	43.82
Bra018304.1-P	Field mustard	nucleus	47.49	43.75
AT1G06770.1	Thale cress	nucleus	46.23	43.71
PGSC0003DMT400051660	Potato	nucleus	48.99	43.14
KRH32110	Soybean	nucleus	46.23	42.89
KRH71326	Soybean	mitochondrion, nucleus	46.23	42.69
KXG37982	Sorghum	nucleus	53.27	41.09
CDY23989	Canola	nucleus	44.22	41.03
Bra021651.1-P	Field mustard	nucleus	35.18	39.77
TraesCS5A01G378600.1	Wheat	nucleus	50.0	39.17
Zm00001d033322_P001	Maize	nucleus	51.76	39.16
VIT_05s0020g04730.t01	Wine grape	nucleus	46.48	39.03
HORVU5Hr1G093720.3	Barley	nucleus	51.01	38.96
Zm00001d041405_P001	Maize	nucleus	47.49	38.89
Zm00001d030985_P001	Maize	nucleus	46.23	38.66
TraesCS5D01G388500.1	Wheat	nucleus	50.0	38.27
TraesCS5D01G069800.1	Wheat	nucleus	45.23	38.14
TraesCS5B01G382100.1	Wheat	nucleus	49.25	37.98
TraesCS5A01G058000.1	Wheat	nucleus	44.97	37.92
PGSC0003DMT400013629	Potato	nucleus	27.89	37.88
HORVU5Hr1G014430.6	Barley	nucleus	44.97	37.76
Os03t0632800-01	Rice	nucleus	40.7	37.5
TraesCS5B01G065600.1	Wheat	cytosol	44.47	37.5
Os12t0600200-03	Rice	cytosol, nucleus	31.91	36.92
Bra015526.1-P	Field mustard	nucleus	22.11	35.92
CDY06664	Canola	nucleus	33.67	34.99
Bra015525.1-P	Field mustard	cytosol	33.17	31.5
OQU79520	Sorghum	nucleus	43.47	31.34
CDY61240	Canola	nucleus	14.07	31.11
KRH34379	Soybean	nucleus	32.16	29.36
KRG92425	Soybean	nucleus	31.41	29.34
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	10.3	27.33
PGSC0003DMT400087291	Potato	nucleus	20.85	26.69
CDX94870	Canola	nucleus	29.65	26.28
Bra001901.1-P	Field mustard	nucleus	27.64	23.76
PGSC0003DMT400010761	Potato	nucleus	29.4	23.68
CDX92974	Canola	cytosol	26.38	22.68
AT3G23060.1	Thale cress	nucleus	27.14	22.5
Solyc09g083300.1.1	Tomato	nucleus, plastid	15.08	22.47
PGSC0003DMT400015657	Potato	nucleus, plastid	20.35	20.51
Solyc09g083310.1.1	Tomato	nucleus	20.35	20.25
PGSC0003DMT400087288	Potato	plastid	8.29	19.88

Protein Annotations

EnsemblPlants:GSMUA_Achr9P10710_001	EnsemblPlants:GSMUA_Achr9T10710_001	EnsemblPlantsGene:GSMUA_Achr9G10710_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PFAM:PF13923
PFscan:PS50089	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000295E71D
UniProt:M0TZ80	MapMan:12.3.5.1.1.1	:	:	:	:

Description

E3 ubiquitin protein ligase DRIP2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G10710_001]

Coordinates

chr9:+:6975015..6982871

Molecular Weight (calculated)

44333.1 Da

IEP (calculated)

9.276

GRAVY (calculated)

-0.486

Length

398 amino acids

Sequence
(BLAST)

001: MVTVKRELLA ACMTCPLCHK LLRDATTISE CLHTFCRKCI CEKLTDEEID CCPICNIDLG CVPVEKLRPD HNLQDLRAKI FPFKRRKVEA PENFPLLSLP
101: VRRKERSLSS LVVNTPRLAT QTGLTGRQTR AVARRAAILR GQSPGTHDSV KREDEYVDRL TENSGNPSKS AVSRRQSASN AESSSNAAIK VTDCGGESYQ
201: DKTELWKPLN CLVEAANSTK SFKSSPQSAV IKSEHINNPD VETTINKTRN KEHLHKRLQG VNRKRKDLST SAHALFDAAS AQCDRRICPI WFQLLASFDQ
301: EGDPPLPQIP NSYLRIKDGN VPVSFIQKYL VRKLNLDNEA EVAVTCRGEP VSPATSLHNL VEQWLRGGSS QKLQASIGTS AKEFVMVLAY GRRKVSAQ

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.