Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g082100.2.1
Solyc03g083000.2.1
Solyc06g048630.2.1
Solyc06g049040.2.1
Solyc06g074190.2.1
Solyc09g009210.2.1
Solyc09g091060.2.1
Solyc10g005220.2.1
Solyc10g083520.1.1
Solyc11g068720.1.1
Solyc12g097060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G30580.1 Solyc02g082100.2.1 AT1G30860.1 21798944
AT2G30580.1 Solyc10g005220.2.1 AT1G30860.1 21798944
AT2G30580.1 Solyc06g048630.2.1 AT2G40620.1 21798944
AT2G30580.1 Solyc06g049040.2.1 AT2G40620.1 21798944
AT2G30580.1 Solyc03g083000.2.1 AT2G46550.1 21798944
AT2G30580.1 Solyc09g009210.2.1 AT3G09980.1 21798944
AT2G30580.1 Solyc10g083520.1.1 AT3G09980.1 21798944
AT2G30580.1 Solyc09g091060.2.1 AT4G13540.1 21798944
AT2G30580.1 Solyc12g097060.1.1 AT4G13540.1 21798944
AT2G30580.1 Solyc06g074190.2.1 AT5G22310.1 21798944
AT2G30580.1 Solyc11g068720.1.1 AT5G22310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400038984 Potato nucleus 95.35 95.35
Solyc06g084040.2.1 Tomato nucleus 72.79 72.62
Solyc06g008600.2.1 Tomato nucleus 67.67 69.62
VIT_07s0141g00610.t01 Wine grape nucleus 67.67 67.67
KRG95629 Soybean nucleus 61.86 62.15
Bra022807.1-P Field mustard cytosol 9.77 60.0
KRH67309 Soybean nucleus 61.86 59.78
CDY47131 Canola nucleus 53.26 54.92
CDY10748 Canola nucleus 52.79 53.92
KRH32110 Soybean nucleus 53.72 53.85
AT2G30580.1 Thale cress nucleus 52.09 53.33
KRH71326 Soybean mitochondrion, nucleus 53.02 52.9
AT1G06770.1 Thale cress nucleus 50.93 52.02
Bra018304.1-P Field mustard nucleus 51.86 51.62
CDX97807 Canola nucleus 49.77 51.44
GSMUA_Achr9P10710_001 Banana nucleus 47.44 51.26
CDY29659 Canola nucleus 49.53 50.59
Bra021651.1-P Field mustard nucleus 39.07 47.73
Os03t0741700-00 Rice cytosol 21.16 47.4
CDY23989 Canola nucleus 46.51 46.62
GSMUA_Achr5P03230_001 Banana nucleus 47.44 46.36
GSMUA_Achr4P17750_001 Banana nucleus 41.63 46.02
Os12t0600200-03 Rice cytosol, nucleus 31.86 39.83
Zm00001d030985_P001 Maize nucleus 43.02 38.87
TraesCS5D01G069800.1 Wheat nucleus 42.56 38.77
Os03t0632800-01 Rice nucleus 38.84 38.66
HORVU5Hr1G014430.6 Barley nucleus 42.56 38.61
TraesCS5A01G378600.1 Wheat nucleus 45.58 38.58
TraesCS5A01G058000.1 Wheat nucleus 42.33 38.56
Zm00001d041405_P001 Maize nucleus 43.26 38.27
TraesCS5D01G388500.1 Wheat nucleus 46.28 38.27
TraesCS5B01G382100.1 Wheat nucleus 45.81 38.18
TraesCS5B01G065600.1 Wheat cytosol 41.86 38.14
HORVU5Hr1G093720.3 Barley nucleus 46.05 38.0
KXG37982 Sorghum nucleus 45.35 37.79
Zm00001d033322_P001 Maize nucleus 46.05 37.64
CDY06664 Canola nucleus 33.26 37.34
Bra015526.1-P Field mustard nucleus 20.7 36.33
OQU79520 Sorghum nucleus 43.72 34.06
TraesCS5D01G391100.1 Wheat mitochondrion 29.53 33.87
TraesCS5A01G381800.1 Wheat mitochondrion 29.53 33.87
Bra015525.1-P Field mustard cytosol 31.86 32.7
TraesCS5B01G385300.1 Wheat mitochondrion 30.23 32.5
Zm00001d013303_P001 Maize nucleus 29.07 32.13
Zm00001d033967_P001 Maize nucleus 27.67 31.15
KXG37592 Sorghum mitochondrion, nucleus 35.12 30.94
Solyc01g020110.1.1 Tomato endoplasmic reticulum 10.23 29.33
HORVU5Hr1G094160.2 Barley plastid 29.3 28.44
Solyc09g083300.1.1 Tomato nucleus, plastid 14.65 23.6
Solyc09g083310.1.1 Tomato nucleus 20.47 22.0
Protein Annotations
EnsemblPlants:Solyc09g065990.2.1EnsemblPlantsGene:Solyc09g065990.2Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSPANTHER:PTHR10825PANTHER:PTHR10825:SF42PFAM:PF13923PFscan:PS50089
ScanProsite:PS00518SMART:SM00184SUPFAM:SSF57850UniParc:UPI000276CB42UniProt:K4CUM5MapMan:12.3.5.1.1.1
Description
No Description!
Coordinates
chr9:+:64254682..64265464
Molecular Weight (calculated)
48125.3 Da
IEP (calculated)
9.179
GRAVY (calculated)
-0.642
Length
430 amino acids
Sequence
(BLAST)
001: MTNQLVKVKR DVIAACMTCP LCHNLFRDAT TISECLHTFC RKCIYKKLSD EETEHCPICN IDLGCVPLEK LRPDHNLQDV RAKVFPYKRR KVNAPEIVTS
101: VALPVRRKER SLSSLVVSTP RVSSQTGITG RRTKSVARKA LCGSNFSIEK SLKNEDGSGE DQLDSSSSLE TLNKFTQNMR LNSSSAEPSS HPTPDKETEN
201: GSQQWEGKVD LWKPLNCLVE AANRSKSSRF TSDGSTAKSE GRHSHDREGH VRKTKVKEHG QKSKIKDDNN SDPAPPEFDK PKKSRRIRQK KASFYGEFDI
301: SPQTFLDATT ARCEKRIYPI WFSLVASEDQ EGDAPLPQIS ASYLRIKDGN IPVCFIQKYL MRKLDLKSED EVEIRCMGQS IVPSLPLNSL VDMWLQTTPS
401: ERIPAIIGSS AKDFVMGLAY ARKSPGTAAS
Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.