Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37592 | Sorghum | mitochondrion, nucleus | 63.75 | 50.82 |
| Zm00001d033967_P001 | Maize | nucleus | 42.42 | 43.19 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 33.42 | 34.67 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 33.16 | 34.4 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 34.19 | 33.25 |
| KRG95629 | Soybean | nucleus | 33.42 | 30.37 |
| PGSC0003DMT400038984 | Potato | nucleus | 32.39 | 29.3 |
| VIT_14s0081g00070.t01 | Wine grape | nucleus | 33.68 | 29.18 |
| Solyc09g065990.2.1 | Tomato | nucleus | 32.13 | 29.07 |
| AT2G30580.1 | Thale cress | nucleus | 31.36 | 29.05 |
| KRH67309 | Soybean | nucleus | 33.16 | 28.99 |
| CDX97807 | Canola | nucleus | 30.85 | 28.85 |
| KRH71326 | Soybean | mitochondrion, nucleus | 31.36 | 28.31 |
| CDY47131 | Canola | nucleus | 29.82 | 27.82 |
| CDY10748 | Canola | nucleus | 30.08 | 27.79 |
| KRH32110 | Soybean | nucleus | 30.59 | 27.74 |
| CDY29659 | Canola | nucleus | 29.82 | 27.55 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 30.33 | 27.44 |
| Bra018304.1-P | Field mustard | nucleus | 30.33 | 27.31 |
| CDY61240 | Canola | nucleus | 12.6 | 27.22 |
| KRH34095 | Soybean | nucleus | 30.08 | 27.08 |
| KRG92687 | Soybean | nucleus | 30.08 | 27.02 |
| Solyc06g008600.2.1 | Tomato | nucleus | 28.79 | 26.79 |
| Solyc06g084040.2.1 | Tomato | nucleus | 29.56 | 26.68 |
| HORVU5Hr1G094160.2 | Barley | plastid | 29.56 | 25.96 |
| PGSC0003DMT400051660 | Potato | nucleus | 29.56 | 25.44 |
| Zm00001d041405_P001 | Maize | nucleus | 31.62 | 25.31 |
| AT1G06770.1 | Thale cress | nucleus | 27.25 | 25.18 |
| CDY23989 | Canola | nucleus | 27.76 | 25.17 |
| Zm00001d030985_P001 | Maize | nucleus | 30.59 | 25.0 |
| Zm00001d034468_P001 | Maize | nucleus | 23.65 | 23.77 |
| Bra015526.1-P | Field mustard | nucleus | 14.91 | 23.67 |
| VIT_05s0020g04730.t01 | Wine grape | nucleus | 28.28 | 23.21 |
| Bra021651.1-P | Field mustard | nucleus | 20.05 | 22.16 |
| Zm00001d033322_P001 | Maize | nucleus | 29.31 | 21.67 |
| KRG92425 | Soybean | nucleus | 23.14 | 21.13 |
| KRH34379 | Soybean | nucleus | 23.39 | 20.87 |
| CDY06664 | Canola | nucleus | 17.99 | 18.28 |
| Bra015525.1-P | Field mustard | cytosol | 18.51 | 17.18 |
| PGSC0003DMT400087291 | Potato | nucleus | 13.37 | 16.72 |
| CDX94870 | Canola | nucleus | 19.28 | 16.7 |
| Bra001901.1-P | Field mustard | nucleus | 19.54 | 16.41 |
| AT3G23060.1 | Thale cress | nucleus | 19.02 | 15.42 |
| PGSC0003DMT400013629 | Potato | nucleus | 11.57 | 15.36 |
| CDX92974 | Canola | cytosol | 18.25 | 15.33 |
| PGSC0003DMT400010761 | Potato | nucleus | 17.22 | 13.56 |
| Zm00001d018972_P005 | Maize | nucleus, plastid | 17.48 | 13.41 |
| Solyc09g083300.1.1 | Tomato | nucleus, plastid | 8.74 | 12.73 |
| Zm00001d031900_P001 | Maize | cytosol | 8.23 | 10.92 |
| Solyc09g083310.1.1 | Tomato | nucleus | 11.05 | 10.75 |
| Solyc01g020110.1.1 | Tomato | endoplasmic reticulum | 4.11 | 10.67 |
| PGSC0003DMT400015657 | Potato | nucleus, plastid | 9.25 | 9.11 |
| Bra022807.1-P | Field mustard | cytosol | 1.54 | 8.57 |
| PGSC0003DMT400087288 | Potato | plastid | 3.08 | 7.23 |
Protein Annotations
| EnsemblPlants:Zm00001d013303_P001 | EnsemblPlants:Zm00001d013303_T001 | EnsemblPlantsGene:Zm00001d013303 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF42 | PFAM:PF13923 |
| PFscan:PS50089 | ProteinID:AQK63059.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000842813F | UniProt:A0A1D6GHX9 | MapMan:12.3.5.1.1.1 | : | : | : |
Description
Protein binding protein
Coordinates
chr5:+:8163573..8168474
Molecular Weight (calculated)
43306.4 Da
IEP (calculated)
10.113
GRAVY (calculated)
-0.888
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAARRLARV RREALAACMT CPLCRGLLRE ATAVALCLHT FCRDCIVEKI NDDDADCCPV CNIDLGCDPE EKLRPDHNLQ DIRNKVFPIK KINADSPKSL
101: TTLPAKRKQR SLSSLVVDTP RSVVKRTGLT GKRTKAKRKT VASSAASPIN NGTMQLPTKF ENRDQKTDKS CASQSTNVAS AANKTENQDL KKTRKTSAKQ
201: STRAATSANR KQQNTDVDVS SKPSSENRKN GTTADKDELR KYSKIPRSTP KIHAVNEEQI KKKEDELPTR KAEADNKVVI PGTTVREHSN NSNLKEKDNG
301: SSPESSPLKD KTTADDDSYQ CLLGSASDVR DPITTPVWFL LISLPNQKED PQLPQLSKSY MRIKDRSLQI SSVQRYIMKK LDLANENEN
101: TTLPAKRKQR SLSSLVVDTP RSVVKRTGLT GKRTKAKRKT VASSAASPIN NGTMQLPTKF ENRDQKTDKS CASQSTNVAS AANKTENQDL KKTRKTSAKQ
201: STRAATSANR KQQNTDVDVS SKPSSENRKN GTTADKDELR KYSKIPRSTP KIHAVNEEQI KKKEDELPTR KAEADNKVVI PGTTVREHSN NSNLKEKDNG
301: SSPESSPLKD KTTADDDSYQ CLLGSASDVR DPITTPVWFL LISLPNQKED PQLPQLSKSY MRIKDRSLQI SSVQRYIMKK LDLANENEN
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.