Factsheet for Zm00001d043199_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01602	Sorghum	cytosol	89.05	88.83
Os01t0798900-00	Rice	cytosol	61.07	63.22
TraesCS3B01G358800.1	Wheat	extracellular	56.2	59.08
TraesCS3D01G322300.1	Wheat	cytosol	55.47	58.31
GSMUA_Achr1P08716_001	Banana	cytosol	38.93	39.7
GSMUA_Achr1P08690_001	Banana	mitochondrion	16.79	38.55
AT5G45490.1	Thale cress	cytosol	20.68	24.01
AT5G45440.1	Thale cress	cytosol	20.19	23.99
CDX78918	Canola	cytosol	13.63	23.43
Bra013373.1-P	Field mustard	nucleus	13.38	23.11
AT4G19060.1	Thale cress	cytosol	21.17	22.72
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	12.65	21.31
CDY70054	Canola	nucleus	19.71	21.2
Bra021980.1-P	Field mustard	cytosol, nucleus, plasma membrane	18.98	20.74
CDY65474	Canola	cytosol	18.73	20.59
Zm00001d007932_P001	Maize	cytosol	21.41	16.83

Protein Annotations

EMBL:EU956140	EnsemblPlants:Zm00001d043199_P001	EnsemblPlants:Zm00001d043199_T001	EnsemblPlantsGene:Zm00001d043199	EntrezGene:100281260	Gene3D:3.40.50.300
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase
PANTHER:PTHR23155	PFAM:PF00931	PRINTS:PR00364	ProteinID:ONM37200.1	SEG:seg	SUPFAM:SSF52540
UniParc:UPI000182B9D2	UniProt:B6STS5	MapMan:35.1	:	:	:

Description

Disease resistance protein RGA4

Coordinates

chr3:-:191414936..191416171

Molecular Weight (calculated)

45326.1 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.188

Length

411 amino acids

Sequence
(BLAST)

001: MAVEVVQFLV KKFVDSFTEE AADAEAELPF RAQFHDMRTD LEKAAVSPAN ADELRECLYE LNDLLAECRR LANRPNQQRW CFAQSDAWRF PKTKKRVTAV
101: RRRVLECVEN DSGGNAAASQ EDAAAGLDRW TTSWLEGSRI HGFDQQLAEL ESMAFRDCGA GKLNGVGIVG MGGIGKTVLA QLLFSSPRAK GRFFPRIWMC
201: MSRTASAGAD RRKEVLQGML MALGHEEDAI LSMNGSDSLT ELTIAVHEQL EGKRFLIVFD DVWHIDSWYS DVVGVGPQNA MRRADDLSVL SERLAFALPK
301: GRGGLVIVTS RLEQAAEAMV RKSCLYRVRP LVDSASWAIF MDVVLSQPQE KKAVDLVTVN HMKQEILETC GGFPSAAKTM GDIFASSSVS PPASTSTSEE
401: LGKSDHIITA R

Best Arabidopsis Sequence Match ( AT4G19060.1 )
(BLAST)

001: MDIAKKFISE IDDKLESKSE FDKELEKIKS SFNEEYEKWS SGKQRGSSSK HGNQSTHGDS SPTRNSSGSS KKGRPKANRV ETSSELPDHL IRGFINEKLF
101: LKNFLLKQKE SEEFKTLAIV GKYGVGKTTL CQAVFNDEDV KQVYFPRIWV SMYSKETKED EDPKIDVVKR ILRSLGVEDE MFKHIKTEAE EEKSIKDEAG
201: EREEETVKEK ELARLLYALH LNLIGKKYLI VLDDVWEDNE WDQRLDDEKK QQEKSHLSCG FPKGFGGKVI MTSRDERLAK AIVGEEENLQ RLFPRSDAES
301: LWEIYIDAVP TKVDDAAATN LGDAVATNAG DAVAPKVNPR YPGRYKQELM DKSCGIPLAA RMLAKIEPVK VDEIGNIDRK QSF

Arabidopsis Description

Probable disease resistance protein At4g19060 [Source:UniProtKB/Swiss-Prot;Acc:Q84WD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.