Factsheet for Bra021980.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G45440.1	Bra024548.1-P	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	62.77	96.72
AT5G45440.1	Thale cress	cytosol	56.91	61.85
AT5G45490.1	Thale cress	cytosol	57.98	61.58
Bra013373.1-P	Field mustard	nucleus	24.73	39.08
GSMUA_Achr1P08690_001	Banana	mitochondrion	13.83	29.05
GSMUA_Achr1P08716_001	Banana	cytosol	23.4	21.84
Os01t0798900-00	Rice	cytosol	22.61	21.41
TraesCS3B01G358800.1	Wheat	extracellular	22.07	21.23
TraesCS3D01G322300.1	Wheat	cytosol	21.81	20.97
EES01602	Sorghum	cytosol	21.28	19.42
Zm00001d043199_P001	Maize	cytosol	20.74	18.98

Protein Annotations

EnsemblPlants:Bra021980.1	EnsemblPlants:Bra021980.1-P	EnsemblPlantsGene:Bra021980	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR43886
PANTHER:PTHR43886:SF7	PFAM:PF00931	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0002545B5B	UniProt:M4DZN3
MapMan:35.1	:	:	:	:	:

Description

AT5G45490 (E=1e-100) | disease resistance protein-related

Coordinates

chrA02:+:18117036..18118166

Molecular Weight (calculated)

42803.3 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.797

Length

376 amino acids

Sequence
(BLAST)

001: MNPEIPKQGE AFLNLFNQKY EDWANNGNKT EQKDPKSKYL STGTLKKREG GALEPDETDR VESDSKLPGH IIHGFSNEIK SLKNFLLDQK VYNEFKTLVV
101: VGEYGVGKTA LCKTIFNDED VKSVYAPRIW VSMHSTERSE DGLDGKISVL KNILTVLGVE VSILVKINKY AVDEYKSNME SEVESKKHDA ETAKEKEISA
201: LLYALHLNLR WKKYLIVFDD VREEDNWNEK LQDDEEKLKK DKRWGKYLSD GFPKGSGGRV IYTTRDENKN LAKKLVAEEH EIHRLWPLTD SLSVWRIYDA
301: ARIENEEDDP PRNDKKCIEE LMNKSRGLPL AVRLLATLLP VFLDDESTEQ NGSTNGTTGS ENTTTEQNGS TQPPTA

Best Arabidopsis Sequence Match ( AT5G45490.2 )
(BLAST)

001: MPSKNLQQAV LTNEFTTNFI TTCKDWLDVN GLAKGNLEKK RDDNEEEERL KTESKLPGHD IHGFDNEIKS LQHFLLDQKV RREFKSLVIV GEYGVGKTAL
101: CQKIFNDEAV KSVYAPRVWV SMENKESKEG LDGKICVLKK ILKGLGVEEL ILETISTDAK QEFKDNEEVA SNQEAGEIDR ETEKEKELSA LLYALHLNLR
201: WKKYLIVFDD VRENDNWDEK LDAKLKEDEK WGKYLSDGFP KGSGGRVIYT TRDENLAKNL VAQKHEIHRL WPLSDHQSVW KIYDAVVKDK QKESPRNDKK
301: CIDELMNKSR GLPLAARLLA ERDPVFVDDE VGPVGSTHGQ TDSSNRQPAN QASS

Arabidopsis Description

Probable disease resistance protein At5g45490 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.