Factsheet for GSMUA_Achr1P08690_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P08716_001	Banana	cytosol	77.65	34.49
CDX78918	Canola	cytosol	29.05	21.76
Bra013373.1-P	Field mustard	nucleus	28.49	21.43
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	26.82	19.67
Os01t0798900-00	Rice	cytosol	41.9	18.89
EES01602	Sorghum	cytosol	40.78	17.72
Zm00001d043199_P001	Maize	cytosol	38.55	16.79
TraesCS3B01G358800.1	Wheat	extracellular	35.75	16.37
TraesCS3D01G322300.1	Wheat	cytosol	35.75	16.37
AT5G45440.1	Thale cress	cytosol	26.82	13.87
Bra021980.1-P	Field mustard	cytosol, nucleus, plasma membrane	29.05	13.83
CDY70054	Canola	nucleus	29.05	13.61
AT5G45490.1	Thale cress	cytosol	26.82	13.56
CDY65474	Canola	cytosol	27.93	13.37
AT4G19060.1	Thale cress	cytosol	28.49	13.32

Protein Annotations

EnsemblPlants:GSMUA_Achr1P08690_001	EnsemblPlants:GSMUA_Achr1T08690_001	EnsemblPlantsGene:GSMUA_Achr1G08690_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	PANTHER:PTHR23155	PFAM:PF00931
PRINTS:PR00364	SUPFAM:SSF52540	UniParc:UPI000294FB0B	UniProt:M0RY77	MapMan:35.2	:

Description

Truncated NBS-LRR disease resistance protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G08690_001]

Coordinates

chr1:+:6618078..6618617

Molecular Weight (calculated)

19912.8 Da

IEP (calculated)

5.624

GRAVY (calculated)

-0.477

Length

179 amino acids

Sequence
(BLAST)

001: MALGSRGRGH HIHLRSRCRK RWPRGVDVRA PPPIDEQRYL IVFDDVWNID EWYEGLMSSG LPDEGEWAGH LRLDRVLPKD CGGSVIVTSR LEEVAVKMVG
101: KENMCRIEPD KDGECCWNIF MDSVTEGGLA GDHPTLRSMK TEIVDRCGGL PLAAKTVGEI LRGSLSPAEN SEPENGLHP

Best Arabidopsis Sequence Match ( AT4G19060.1 )
(BLAST)

001: MDIAKKFISE IDDKLESKSE FDKELEKIKS SFNEEYEKWS SGKQRGSSSK HGNQSTHGDS SPTRNSSGSS KKGRPKANRV ETSSELPDHL IRGFINEKLF
101: LKNFLLKQKE SEEFKTLAIV GKYGVGKTTL CQAVFNDEDV KQVYFPRIWV SMYSKETKED EDPKIDVVKR ILRSLGVEDE MFKHIKTEAE EEKSIKDEAG
201: EREEETVKEK ELARLLYALH LNLIGKKYLI VLDDVWEDNE WDQRLDDEKK QQEKSHLSCG FPKGFGGKVI MTSRDERLAK AIVGEEENLQ RLFPRSDAES
301: LWEIYIDAVP TKVDDAAATN LGDAVATNAG DAVAPKVNPR YPGRYKQELM DKSCGIPLAA RMLAKIEPVK VDEIGNIDRK QSF

Arabidopsis Description

Probable disease resistance protein At4g19060 [Source:UniProtKB/Swiss-Prot;Acc:Q84WD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.