Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013373.1-P | Field mustard | nucleus | 37.08 | 59.66 |
| CDX78918 | Canola | cytosol | 37.08 | 59.41 |
| CDY70054 | Canola | nucleus | 55.09 | 55.24 |
| AT5G45490.1 | Thale cress | cytosol | 40.47 | 43.79 |
| AT5G45440.1 | Thale cress | cytosol | 39.43 | 43.64 |
| GSMUA_Achr1P08690_001 | Banana | mitochondrion | 13.32 | 28.49 |
| GSMUA_Achr1P08716_001 | Banana | cytosol | 26.63 | 25.31 |
| EES01602 | Sorghum | cytosol | 23.76 | 22.09 |
| TraesCS3B01G358800.1 | Wheat | extracellular | 22.45 | 21.99 |
| TraesCS3D01G322300.1 | Wheat | cytosol | 22.45 | 21.99 |
| Os01t0798900-00 | Rice | cytosol | 22.45 | 21.66 |
| Zm00001d043199_P001 | Maize | cytosol | 22.72 | 21.17 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:827644 | UniProt:A0A178V0N6 | ProteinID:AEE84135.1 | ArrayExpress:AT4G19060 |
| EnsemblPlantsGene:AT4G19060 | RefSeq:AT4G19060 | TAIR:AT4G19060 | RefSeq:AT4G19060-TAIR-G | EnsemblPlants:AT4G19060.1 | TAIR:AT4G19060.1 |
| Unigene:At.32841 | EMBL:BT003952 | EMBL:BT021994 | ProteinID:CAA16764.1 | ProteinID:CAB78908.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0043531 | InterPro:NB-ARC | RefSeq:NP_193641.1 | ProteinID:OAO99879.1 | InterPro:P-loop_NTPase | PFAM:PF00931 |
| PO:PO:0000293 | PANTHER:PTHR43886 | UniProt:Q501H3 | UniProt:Q84WD3 | SUPFAM:SSF52540 | UniParc:UPI00000A441E |
| SEG:seg | : | : | : | : | : |
Description
Probable disease resistance protein At4g19060 [Source:UniProtKB/Swiss-Prot;Acc:Q84WD3]
Coordinates
chr4:-:10444916..10446300
Molecular Weight (calculated)
43577.4 Da
IEP (calculated)
5.479
GRAVY (calculated)
-0.789
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIAKKFISE IDDKLESKSE FDKELEKIKS SFNEEYEKWS SGKQRGSSSK HGNQSTHGDS SPTRNSSGSS KKGRPKANRV ETSSELPDHL IRGFINEKLF
101: LKNFLLKQKE SEEFKTLAIV GKYGVGKTTL CQAVFNDEDV KQVYFPRIWV SMYSKETKED EDPKIDVVKR ILRSLGVEDE MFKHIKTEAE EEKSIKDEAG
201: EREEETVKEK ELARLLYALH LNLIGKKYLI VLDDVWEDNE WDQRLDDEKK QQEKSHLSCG FPKGFGGKVI MTSRDERLAK AIVGEEENLQ RLFPRSDAES
301: LWEIYIDAVP TKVDDAAATN LGDAVATNAG DAVAPKVNPR YPGRYKQELM DKSCGIPLAA RMLAKIEPVK VDEIGNIDRK QSF
101: LKNFLLKQKE SEEFKTLAIV GKYGVGKTTL CQAVFNDEDV KQVYFPRIWV SMYSKETKED EDPKIDVVKR ILRSLGVEDE MFKHIKTEAE EEKSIKDEAG
201: EREEETVKEK ELARLLYALH LNLIGKKYLI VLDDVWEDNE WDQRLDDEKK QQEKSHLSCG FPKGFGGKVI MTSRDERLAK AIVGEEENLQ RLFPRSDAES
301: LWEIYIDAVP TKVDDAAATN LGDAVATNAG DAVAPKVNPR YPGRYKQELM DKSCGIPLAA RMLAKIEPVK VDEIGNIDRK QSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.