Factsheet for TraesCS3D01G322300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT5G45440.1	TraesCS2D01G505300.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G358800.1	Wheat	extracellular	93.35	93.35
Os01t0798900-00	Rice	cytosol	67.26	66.25
EES01602	Sorghum	cytosol	61.89	58.74
Zm00001d043199_P001	Maize	cytosol	58.31	55.47
GSMUA_Achr1P08716_001	Banana	cytosol	39.64	38.46
GSMUA_Achr1P08690_001	Banana	mitochondrion	16.37	35.75
CDX78918	Canola	cytosol	15.86	25.94
Bra013373.1-P	Field mustard	nucleus	15.6	25.63
AT5G45440.1	Thale cress	cytosol	20.97	23.7
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	14.58	23.36
AT5G45490.1	Thale cress	cytosol	20.46	22.6
CDY70054	Canola	nucleus	21.99	22.51
AT4G19060.1	Thale cress	cytosol	21.99	22.45
CDY65474	Canola	cytosol	20.97	21.93
Bra021980.1-P	Field mustard	cytosol, nucleus, plasma membrane	20.97	21.81
TraesCS2D01G264700.1	Wheat	cytosol	24.81	21.6

Protein Annotations

EnsemblPlants:TraesCS3D01G322300.1	EnsemblPlantsGene:TraesCS3D01G322300	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	PANTHER:PTHR23155	PFAM:PF00931	PRINTS:PR00364
SEG:seg	SUPFAM:SSF52540	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3D:+:435295584..435296759

Molecular Weight (calculated)

43252.8 Da

IEP (calculated)

5.195

GRAVY (calculated)

-0.154

Length

391 amino acids

Sequence
(BLAST)

001: MAVVVQFLVR KFVDSLAEEG DAELPFSSHF YDMRAGLEKA ATSSTNTDEL RECMYELNNL LSQCRMLTNR PITRSCYFSP SEAWLSNKVK QRVIAVKRRV
101: LQCVQNDDPN GDATASPEEN ATTAGFSRWS TSWVEQSRVY GFDQQLAELE SRAFGNSSPG RLTGVGIVGM GGIGKTALAQ LVFNSPLARR RFFPRIWVCL
201: SRTSCIGKDV RKEVLQSILM ALGLEEEFIL AIDSLGDLEL AVHEQLKGKR YLIVFDDVWN IDDWYANVAG HANALSRGEQ LPNGLVLGLP KERGGVVVVT
301: SRQEQAAEMM VGKGSVYRVQ PLADRESAWA IFMDALNKER QPIDLAAIND LKEEILQTCG GLPSMAKAMA DIFAKSLTLP ASTSSQELKL E

Best Arabidopsis Sequence Match ( AT5G45440.1 )
(BLAST)

001: MTQEDSSRGL TSVGRVDFTN RFADRYNEWL GTTGDETKQV EDRVETDSGL PGHDIYGFEN EIKSLQHFLL DQKSYKLFKS LVVVGEYGVG KTALCQQIFN
101: DYDVRNAYAP RIWVSMHSNE SKEGLDGKIC VLKTILKGLG VEESMFESIH REVVEEVSNR QEAGEIDGET AKEKEISALL YALHLNLRWK KYLIVFDDVQ
201: EIDNWDEKLD AKLNEGEKWG KYLSDGFPKG SGGRVIYTTR DENLAKNLVV QKHEIHRLWP LSDSNSVWKI YEAMIQKREK ESPRNDKKCI DELMNKSRGL
301: PLAARLLAEL DPMLFDDGKA NQNGSKDGKT DSVDNPNSEE SKTKPL

Arabidopsis Description

Probable disease resistance protein At5g45440 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.