Factsheet for GSMUA_Achr1P08716_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P08690_001	Banana	mitochondrion	34.49	77.65
Os01t0798900-00	Rice	cytosol	43.92	44.58
EES01602	Sorghum	cytosol	40.94	40.05
TraesCS3D01G322300.1	Wheat	cytosol	38.46	39.64
Zm00001d043199_P001	Maize	cytosol	39.7	38.93
TraesCS3B01G358800.1	Wheat	extracellular	37.72	38.87
CDX78918	Canola	cytosol	16.63	28.03
Bra013373.1-P	Field mustard	nucleus	16.38	27.73
AT4G19060.1	Thale cress	cytosol	25.31	26.63
AT5G45440.1	Thale cress	cytosol	22.08	25.72
AT5G45490.1	Thale cress	cytosol	21.84	24.86
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	14.64	24.18
CDY70054	Canola	nucleus	22.83	24.08
CDY65474	Canola	cytosol	22.08	23.8
Bra021980.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.84	23.4

Protein Annotations

EnsemblPlants:GSMUA_Achr1P08716_001	EnsemblPlants:GSMUA_Achr1T08716_001	EnsemblPlantsGene:GSMUA_Achr1G08716_001	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	PANTHER:PTHR23155	PFAM:PF00931
PRINTS:PR00364	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0002948C94	UniProt:M0RY80	MapMan:35.1

Description

NBS-LRR class resistance protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G08716_001]

Coordinates

chr1:-:6624269..6625480

Molecular Weight (calculated)

45052.5 Da

IEP (calculated)

5.722

GRAVY (calculated)

-0.247

Length

403 amino acids

Sequence
(BLAST)

001: MAVAMVQFLM EKFVDALEEE DSSAVPFHAL FQGIKEDLRV TMRSSVPLGT ADLLRDSLYD LNDILIECRT LSKKHTDLKQ RKRVRLSSMS SLWFLYKARK
101: RLQAIKHSIQ PRNHGAVDQN YSSGSLSGDM EFDRWTSRSV DKSKVYGLDD QLNAIERMLL EEDSGGFKGI GVVGMGGVGK TVLAQMIFNS PPVRRLFFPR
201: LWVCMSQTAK RGRDVRREML ERMLMALGVE EEAITSISEA GAGSGGLAEL MFALHLQLMN KRYLIVFDDV WNIDEWYEGL MSSGLPDEGE WAGHLRLDRV
301: LPKDCGGSVI VTSRLEEVAV KMVGKENMCR IEPDKDGECC WNIFMDSVTK GGLAGDHPTL GSMKTEIVDR CGGLPLAAKT IGEILRRSLS PAENSEPENE
401: LHP

Best Arabidopsis Sequence Match ( AT4G19060.1 )
(BLAST)

001: MDIAKKFISE IDDKLESKSE FDKELEKIKS SFNEEYEKWS SGKQRGSSSK HGNQSTHGDS SPTRNSSGSS KKGRPKANRV ETSSELPDHL IRGFINEKLF
101: LKNFLLKQKE SEEFKTLAIV GKYGVGKTTL CQAVFNDEDV KQVYFPRIWV SMYSKETKED EDPKIDVVKR ILRSLGVEDE MFKHIKTEAE EEKSIKDEAG
201: EREEETVKEK ELARLLYALH LNLIGKKYLI VLDDVWEDNE WDQRLDDEKK QQEKSHLSCG FPKGFGGKVI MTSRDERLAK AIVGEEENLQ RLFPRSDAES
301: LWEIYIDAVP TKVDDAAATN LGDAVATNAG DAVAPKVNPR YPGRYKQELM DKSCGIPLAA RMLAKIEPVK VDEIGNIDRK QSF

Arabidopsis Description

Probable disease resistance protein At4g19060 [Source:UniProtKB/Swiss-Prot;Acc:Q84WD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.