Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g04360.t01 | Wine grape | cytosol | 82.61 | 84.44 |
| HORVU3Hr1G054660.1 | Barley | cytosol | 55.43 | 83.61 |
| HORVU0Hr1G018470.1 | Barley | cytosol | 54.89 | 83.13 |
| HORVU7Hr1G078010.1 | Barley | cytosol | 30.71 | 83.09 |
| Os04t0654700-02 | Rice | cytosol | 81.25 | 83.06 |
| Solyc06g073150.2.1 | Tomato | cytosol | 82.61 | 82.83 |
| PGSC0003DMT400069203 | Potato | cytosol | 82.34 | 82.56 |
| Solyc11g017300.1.1 | Tomato | cytosol | 82.07 | 82.29 |
| HORVU6Hr1G023630.1 | Barley | cytosol | 53.53 | 82.08 |
| PGSC0003DMT400023896 | Potato | cytosol | 81.79 | 82.02 |
| HORVU1Hr1G008160.1 | Barley | cytosol | 33.7 | 81.58 |
| Zm00001d002027_P002 | Maize | extracellular | 80.16 | 81.49 |
| CDY21400 | Canola | cytosol | 78.53 | 81.18 |
| CDY04768 | Canola | cytosol | 78.53 | 81.18 |
| Bra024548.1-P | Field mustard | cytosol | 78.53 | 81.18 |
| KRH61926 | Soybean | nucleus | 82.34 | 81.02 |
| TraesCS2A01G504600.1 | Wheat | cytosol | 79.89 | 80.77 |
| TraesCS2D01G505300.1 | Wheat | golgi, unclear | 79.62 | 80.49 |
| AT1G71230.1 | Thale cress | cytosol | 77.72 | 79.89 |
| AT1G22920.1 | Thale cress | cytosol | 77.45 | 79.83 |
| KXG27287 | Sorghum | cytosol | 80.16 | 79.09 |
| CDY25761 | Canola | cytosol | 76.09 | 78.65 |
| Bra012351.1-P | Field mustard | cytosol | 75.82 | 78.37 |
| HORVU0Hr1G025410.1 | Barley | cytosol | 62.77 | 76.74 |
| HORVU4Hr1G048730.1 | Barley | cytosol | 62.77 | 76.49 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 32.07 | 76.13 |
| KRH52586 | Soybean | cytosol, nucleus | 81.79 | 73.59 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 33.15 | 72.62 |
| HORVU2Hr1G112000.1 | Barley | cytosol | 70.92 | 65.58 |
| HORVU2Hr1G067660.1 | Barley | cytosol, peroxisome | 12.23 | 64.29 |
| HORVU3Hr1G021300.1 | Barley | cytosol, plastid | 25.27 | 56.36 |
| HORVU4Hr1G047410.2 | Barley | cytosol, mitochondrion, peroxisome | 26.09 | 37.94 |
| GSMUA_Achr9P03520_001 | Banana | unclear | 23.91 | 28.57 |
| GSMUA_Achr6P33940_001 | Banana | cytosol | 23.64 | 27.97 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P05640_001 | EnsemblPlants:GSMUA_Achr10T05640_001 | EnsemblPlantsGene:GSMUA_Achr10G05640_001 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | ncoils:Coil | PANTHER:PTHR10410 |
| PANTHER:PTHR10410:SF14 | PFAM:PF01398 | PFscan:PS50249 | SEG:seg | SMART:SM00232 | SUPFAM:SSF102712 |
| UniParc:UPI000295311C | UniProt:M0RFP1 | MapMan:19.2.3.3.1.5 | : | : | : |
Description
COP9 signalosome complex subunit 5a [Source:GMGC_GENE;Acc:GSMUA_Achr10G05640_001]
Coordinates
chr10:+:16091626..16100308
Molecular Weight (calculated)
40816.1 Da
IEP (calculated)
4.751
GRAVY (calculated)
-0.349
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSLSSALA RQTWELENNI VSVDGGSGGN GSGGSDADAI YYYDEAVLAK FQQEKPWTQD PNYFRRVKIS ALALLKMVVH ARSGGTIEVM GLMQGKTDGD
101: TIIVMDAFAL PVEGTETRVN AQADAYEYMV EYAQTNKQAG RLENVVGWYH SHPGYGCWLS GIDVSTQMLN QQFQEPFLAV VIDPTRTVSA GKVEIGAFRT
201: YPQGYKPPDE PVSEYQTIPL NKIEDFGVHC KQYYALDITY FKSALDSHLL DLLWNKYWVN TLSSSPLLGN RDYVAGQISD LAEKLEQAEN QLAHTRLGSF
301: LLPSQRKKEP EESQLAKITR DSSKITVEQV HGLMSQVIKD ILFNSVHHTS CIPPSLTDSS GPEPMVES
101: TIIVMDAFAL PVEGTETRVN AQADAYEYMV EYAQTNKQAG RLENVVGWYH SHPGYGCWLS GIDVSTQMLN QQFQEPFLAV VIDPTRTVSA GKVEIGAFRT
201: YPQGYKPPDE PVSEYQTIPL NKIEDFGVHC KQYYALDITY FKSALDSHLL DLLWNKYWVN TLSSSPLLGN RDYVAGQISD LAEKLEQAEN QLAHTRLGSF
301: LLPSQRKKEP EESQLAKITR DSSKITVEQV HGLMSQVIKD ILFNSVHHTS CIPPSLTDSS GPEPMVES
001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
Arabidopsis Description
CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.