Factsheet for GSMUA_AchrUn_randomP28570_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
extracellular 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P17520_001
GSMUA_Achr3P32460_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P23470_001
GSMUA_Achr4P28510_001
GSMUA_Achr7P00520_001
GSMUA_Achr7P16760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944
AT3G60820.1	GSMUA_Achr4P23470_001	AT5G61010.1	21798944
AT3G60820.1	GSMUA_Achr7P00520_001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P00960_001	Banana	plasma membrane	75.0	35.29
GSMUA_Achr11P...	Banana	cytosol	75.0	35.29
Zm00001d006085_P002	Maize	extracellular	67.31	31.67
Zm00001d021051_P002	Maize	mitochondrion	66.35	31.22
VIT_01s0146g00300.t01	Wine grape	plastid	56.73	30.73
Os09t0505600-01	Rice	plastid	64.42	30.32
TraesCS5A01G285600.1	Wheat	plastid	64.42	30.32
TraesCS5B01G284800.1	Wheat	cytosol	64.42	30.32
TraesCS5D01G292900.1	Wheat	cytosol	64.42	30.32
VIT_15s0048g00900.t01	Wine grape	cytosol	62.5	29.15
EES15319	Sorghum	cytosol	60.58	28.77
PGSC0003DMT400058139	Potato	cytosol	61.54	28.7
Os08t0529100-01	Rice	cytosol	59.62	28.31
Solyc02g084920.2.1	Tomato	plastid	60.58	28.25
PGSC0003DMT400009060	Potato	cytosol	60.58	28.25
Zm00001d031599_P001	Maize	cytosol, extracellular	58.65	27.85
KRG99348	Soybean	nucleus	59.62	27.8
KRH45659	Soybean	endoplasmic reticulum, nucleus	59.62	27.8
CDY56729	Canola	cytosol	58.65	27.35
CDX89080	Canola	cytosol	58.65	27.35
CDX71344	Canola	cytosol	58.65	27.35
CDX67842	Canola	cytosol	58.65	27.35
Bra014468.1-P	Field mustard	cytosol	58.65	27.35
Bra003428.1-P	Field mustard	cytosol	58.65	27.35
CDY52345	Canola	cytosol	57.69	26.91
CDX71775	Canola	cytosol	57.69	26.91
Bra007565.1-P	Field mustard	cytosol	57.69	26.91
AT3G60820.1	Thale cress	cytosol	56.73	26.46
HORVU5Hr1G076130.2	Barley	plastid	64.42	25.97
OQU89746	Sorghum	cytosol	35.58	20.0
GSMUA_Achr4P01890_001	Banana	cytosol	27.88	14.22
Zm00001d018456_P001	Maize	cytosol	14.42	13.89
Zm00001d043281_P001	Maize	cytosol	14.42	13.89
CDY46344	Canola	endoplasmic reticulum	32.69	12.88
GSMUA_Achr10P...	Banana	extracellular	6.73	12.73
GSMUA_Achr9P13190_001	Banana	cytosol	22.12	12.04
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	4.81	6.1
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	6.73	4.67
CDX95297	Canola	cytosol	5.77	4.38
CDY07280	Canola	endoplasmic reticulum, plasma membrane	7.69	3.92

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005839	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSMUA_AchrUn_randomG28570_001	EnsemblPlants:GSMUA_AchrUn_randomP28570_001	EnsemblPlants:GSMUA_AchrUn_randomT28570_001	InterPro:IPR029055
UniProt:M0UD65	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PANTHER:PTHR11599	PANTHER:PTHR11599:SF107
InterPro:Proteasome_bsu_CS	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	TMHMM:TMhelix	UniParc:UPI0002957A71	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28570_001]

Coordinates

chrchrUn_random:-:138560921..138561392

Molecular Weight (calculated)

11305.8 Da

IEP (calculated)

8.588

GRAVY (calculated)

0.295

Length

104 amino acids

Sequence
(BLAST)

001: MALRGNWMYE NNGGTCVAIA GADYCVIAAD TRLSVGYSIY TRDYSKICKL ADKCVMASSG FQGDLKALQK NLAAKHLVSK SHILIFYLTC TSICASLTIP
101: LPQF

Best Arabidopsis Sequence Match ( AT3G60820.2 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTV
201: NKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.