Factsheet for Zm00001d006085_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006805_P001
Zm00001d018961_P002
Zm00001d028871_P001
Zm00001d034443_P001
Zm00001d043365_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G60820.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT3G60820.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d053677_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021051_P002	Maize	mitochondrion	98.19	98.19
OQU89746	Sorghum	cytosol	81.45	97.3
Os09t0505600-01	Rice	plastid	95.93	95.93
TraesCS5D01G292900.1	Wheat	cytosol	94.12	94.12
TraesCS5B01G284800.1	Wheat	cytosol	94.12	94.12
TraesCS5A01G285600.1	Wheat	plastid	94.12	94.12
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	33.94	91.46
Zm00001d031599_P001	Maize	cytosol, extracellular	84.62	85.39
GSMUA_Achr11P...	Banana	cytosol	85.07	85.07
GSMUA_Achr2P00960_001	Banana	plasma membrane	84.16	84.16
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	54.75	80.67
HORVU5Hr1G076130.2	Barley	plastid	94.12	80.62
VIT_15s0048g00900.t01	Wine grape	cytosol	81.0	80.27
KRG99348	Soybean	nucleus	81.0	80.27
Solyc02g084920.2.1	Tomato	plastid	80.54	79.82
KRH45659	Soybean	endoplasmic reticulum, nucleus	80.54	79.82
PGSC0003DMT400058139	Potato	cytosol	80.54	79.82
PGSC0003DMT400009060	Potato	cytosol	80.09	79.37
CDY56729	Canola	cytosol	77.83	77.13
CDX89080	Canola	cytosol	77.83	77.13
CDX71344	Canola	cytosol	77.83	77.13
Bra014468.1-P	Field mustard	cytosol	77.83	77.13
Bra003428.1-P	Field mustard	cytosol	77.38	76.68
CDY52345	Canola	cytosol	77.38	76.68
CDX71775	Canola	cytosol	77.38	76.68
CDX67842	Canola	cytosol	77.38	76.68
Bra007565.1-P	Field mustard	cytosol	77.38	76.68
AT3G60820.1	Thale cress	cytosol	76.92	76.23
Zm00001d018456_P001	Maize	cytosol	33.03	67.59
Zm00001d043281_P001	Maize	cytosol	33.03	67.59
GSMUA_AchrUn_...	Banana	extracellular	31.67	67.31
CDX95297	Canola	cytosol	32.58	52.55
VIT_01s0146g00300.t01	Wine grape	plastid	44.8	51.56
CDY46344	Canola	endoplasmic reticulum	49.32	41.29
CDY07280	Canola	endoplasmic reticulum, plasma membrane	33.94	36.76
Zm00001d036756_P001	Maize	cytosol	14.03	31.31
Zm00001d015526_P002	Maize	cytosol	23.08	24.06
Zm00001d046600_P001	Maize	cytosol	23.98	23.04
Zm00001d036758_P002	Maize	extracellular	10.86	20.87

Protein Annotations

EntrezGene:100286342	MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	UniProt:B4FRQ7	EMBL:BT039795	EMBL:BT065546
EMBL:EU952485	EMBL:EU976935	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	ProteinID:ONM22762.1	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF55	InterPro:Proteasome_beta1	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
UniParc:UPI00017B77B3	EnsemblPlantsGene:Zm00001d006085	EnsemblPlants:Zm00001d006085_P002	EnsemblPlants:Zm00001d006085_T002	:	:

Description

Proteasome subunit beta type

Coordinates

chr2:-:197748870..197753145

Molecular Weight (calculated)

24322.0 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.157

Length

221 amino acids

Sequence
(BLAST)

001: MSRRGDWVYE NNGGTCVAIA GADYCVVAAD TRLSVGYSIL TRDHSKICDL ADKCVLASSG FQGDIKALQK NLAARELLYQ HQHNKRMSCP AMAQLLSNTL
101: YYKRFFPYYA FNVLGGLDSE GKGCVFTYDA VGSYERTGYS AQGTGSTLIM PVLDNQLKSP SPLLLPVRDA VTPLSESEAI DLVKDVFASA TERDIYTGDK
201: LEIVVINKAG TMREYIDLRK D

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.