Factsheet for Bra007565.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra006136.1-P
Bra009783.1-P
Bra012987.1-P
Bra017974.1-P
Bra020466.1-P
Bra023354.1-P
Bra023780.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	Bra001896.1-P	AT3G22960.1	21798944
AT3G60820.1	Bra023780.1-P	AT3G22960.1	21798944
AT3G60820.1	Bra017974.1-P	AT3G49580.1	21798944
AT3G60820.1	Bra006136.1-P	AT5G11980.1	21798944
AT3G60820.1	Bra023354.1-P	AT5G11980.1	21798944
AT3G60820.1	Bra009783.1-P	AT5G24660.1	21798944
AT3G60820.1	Bra020466.1-P	AT5G24660.1	21798944
AT3G60820.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52345	Canola	cytosol	100.0	100.0
CDX71775	Canola	cytosol	100.0	100.0
Bra003428.1-P	Field mustard	cytosol	99.1	99.1
Bra014468.1-P	Field mustard	cytosol	97.31	97.31
AT3G60820.1	Thale cress	cytosol	95.07	95.07
VIT_15s0048g00900.t01	Wine grape	cytosol	88.34	88.34
KRH45659	Soybean	endoplasmic reticulum, nucleus	87.89	87.89
PGSC0003DMT400009060	Potato	cytosol	87.44	87.44
KRG99348	Soybean	nucleus	87.44	87.44
Solyc02g084920.2.1	Tomato	plastid	87.0	87.0
PGSC0003DMT400058139	Potato	cytosol	86.55	86.55
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	31.39	85.37
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	53.81	80.0
GSMUA_Achr11P...	Banana	cytosol	78.48	79.19
GSMUA_Achr2P00960_001	Banana	plasma membrane	78.48	79.19
Zm00001d006085_P002	Maize	extracellular	76.68	77.38
Zm00001d021051_P002	Maize	mitochondrion	76.68	77.38
OQU89746	Sorghum	cytosol	64.13	77.3
Os09t0505600-01	Rice	plastid	75.78	76.47
TraesCS5A01G285600.1	Wheat	plastid	75.78	76.47
TraesCS5B01G284800.1	Wheat	cytosol	75.78	76.47
TraesCS5D01G292900.1	Wheat	cytosol	75.78	76.47
Os08t0529100-01	Rice	cytosol	74.44	75.8
EES15319	Sorghum	cytosol	73.99	75.34
Zm00001d031599_P001	Maize	cytosol, extracellular	73.09	74.43
HORVU5Hr1G076130.2	Barley	plastid	75.78	65.5
Zm00001d018456_P001	Maize	cytosol	28.7	59.26
Zm00001d043281_P001	Maize	cytosol	28.7	59.26
GSMUA_AchrUn_...	Banana	extracellular	26.91	57.69
VIT_01s0146g00300.t01	Wine grape	plastid	47.98	55.73
Bra012292.1-P	Field mustard	cytosol	24.66	26.96
Bra016408.1-P	Field mustard	cytosol	24.66	26.96
Bra038565.1-P	Field mustard	cytosol	24.66	26.96
Bra008308.1-P	Field mustard	cytosol	22.42	26.18
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.22	12.86

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra007565	EnsemblPlants:Bra007565.1	EnsemblPlants:Bra007565.1-P	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4CTM1	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF107	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI00025428D4	:	:	:

Description

AT3G60820 (E=1e-121) PBF1 | PBF1; peptidase/ threonine-type endopeptidase

Coordinates

chrA09:-:29812232..29813423

Molecular Weight (calculated)

24585.4 Da

IEP (calculated)

7.026

GRAVY (calculated)

-0.204

Length

223 amino acids

Sequence
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADKAVLSS SGFQADVKAL QKVLKSRHLV YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYEKVG YSAQGSGSTL IMPFLDNQLK SPSPLLLPAQ DAITPLSEPE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIRTEVMEL RKD

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.