Factsheet for Bra017945.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036756_P001	Maize	cytosol	21.9	92.93
AT1G21720.1	Thale cress	cytosol	45.0	92.65
Bra038565.1-P	Field mustard	cytosol	45.0	92.65
CDY04667	Canola	cytosol	45.0	92.65
CDY08181	Canola	cytosol	45.0	92.65
Bra012292.1-P	Field mustard	cytosol	44.76	92.16
Bra016408.1-P	Field mustard	cytosol	44.76	92.16
Bra008308.1-P	Field mustard	cytosol	41.19	90.58
KRH16390	Soybean	nucleus	42.14	86.76
KRH17983	Soybean	endoplasmic reticulum	41.9	86.27
Solyc04g009410.2.1	Tomato	extracellular	41.67	85.78
PGSC0003DMT400082475	Potato	cytosol	41.19	84.8
VIT_18s0001g02260.t01	Wine grape	cytosol	40.95	84.31
EER90101	Sorghum	cytosol	40.71	83.82
Os06t0643100-01	Rice	plasma membrane	40.48	83.33
TraesCS6A01G145800.1	Wheat	cytosol	40.24	82.84
TraesCS6B01G174200.1	Wheat	golgi	40.24	82.84
EES06388	Sorghum	cytosol	40.24	82.84
TraesCS6D01G135100.1	Wheat	plastid	40.24	82.84
HORVU0Hr1G015750.1	Barley	cytosol	40.0	82.35
Os02t0182500-01	Rice	cytosol	39.76	81.86
TraesCS7B01G437600.1	Wheat	cytosol	39.52	81.37
TraesCS7D01G510600.1	Wheat	cytosol	39.52	81.37
TraesCS7A01G520800.1	Wheat	golgi	39.52	81.37
Zm00001d015526_P002	Maize	cytosol	39.76	78.77
Zm00001d046600_P001	Maize	cytosol	39.52	72.17
HORVU6Hr1G065260.1	Barley	cytosol	8.57	72.0
Zm00001d036758_P002	Maize	extracellular	18.57	67.83
HORVU7Hr1G115980.1	Barley	plastid	39.05	61.89
GSMUA_Achr10P...	Banana	extracellular	6.43	49.09
Bra014468.1-P	Field mustard	cytosol	13.1	24.66
Bra007565.1-P	Field mustard	cytosol	12.86	24.22
Bra003428.1-P	Field mustard	cytosol	12.86	24.22

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	EnsemblPlantsGene:Bra017945	EnsemblPlants:Bra017945.1	EnsemblPlants:Bra017945.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161
GO:GO:0051603	InterPro:IPR023333	InterPro:IPR029055	UniProt:M4DN58	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	TMHMM:TMhelix	UniParc:UPI000253F140	SEG:seg

Description

AT1G21720 (E=1e-104) PBC1 | PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase

Coordinates

chrA06:+:8979921..8982559

Molecular Weight (calculated)

48033.8 Da

IEP (calculated)

9.102

GRAVY (calculated)

-0.215

Length

420 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGEDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYNNL KSEVSGRVMD
201: SFFTGFVHSL GNFFGSPLDF LSGKSCSTLC PSPWDVLCYV ENFCVASLAK AALILIVAYL FLFFIYMLYK IGFWHCIIHG FFRFLWALVS CWFYILSNCC
301: TFFCYDLLHT KRRRRRRNRR YSEDGDDYSD EDNDDGGSFR YHRSRREMRK EERLRKSLKP RSHRVRVGVR KDHPSSDLGL NQHVGGGVGS VHGIRVSRES
401: KFGRKGSKRR ARVYHGPRRI

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.