CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06388	Sorghum	cytosol	95.1	95.1
Os06t0643100-01	Rice	plasma membrane	94.12	94.12
TraesCS7B01G437600.1	Wheat	cytosol	91.67	91.67
TraesCS7A01G520800.1	Wheat	golgi	91.67	91.67
GSMUA_Achr9P13190_001	Banana	cytosol	85.78	91.62
GSMUA_Achr4P01890_001	Banana	cytosol	91.18	91.18
TraesCS7D01G510600.1	Wheat	cytosol	91.18	91.18
KRH16390	Soybean	nucleus	89.22	89.22
KRH17983	Soybean	endoplasmic reticulum	89.22	89.22
KRH64671	Soybean	cytosol	89.22	89.22
Zm00001d036758_P002	Maize	extracellular	50.0	88.7
AT1G21720.1	Thale cress	cytosol	88.24	88.24
CDY08181	Canola	cytosol	87.75	87.75
CDY04667	Canola	cytosol	87.75	87.75
Bra038565.1-P	Field mustard	cytosol	87.75	87.75
CDY00398	Canola	extracellular	87.25	87.25
Bra016408.1-P	Field mustard	cytosol	87.25	87.25
Bra012292.1-P	Field mustard	cytosol	87.25	87.25
AT1G77440.1	Thale cress	cytosol	87.25	87.25
Zm00001d046600_P001	Maize	cytosol	97.55	86.52
CDY01316	Canola	cytosol	87.25	86.41
CDY67773	Canola	extracellular	80.88	86.39
CDY38347	Canola	extracellular	80.88	86.39
Bra008308.1-P	Field mustard	cytosol	80.88	86.39
PGSC0003DMT400082475	Potato	cytosol	86.27	86.27
Solyc04g009410.2.1	Tomato	extracellular	86.27	86.27
CDY71260	Canola	cytosol	80.39	85.86
KRH53242	Soybean	cytosol	76.96	85.33
VIT_18s0001g02260.t01	Wine grape	cytosol	85.29	85.29
CDY70670	Canola	cytosol, mitochondrion	59.8	76.25
CDY40893	Canola	mitochondrion	60.78	75.15
CDY40889	Canola	mitochondrion	28.43	70.73
HORVU7Hr1G115980.1	Barley	plastid	90.2	69.43
Bra017945.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	83.82	40.71
OQU89746	Sorghum	cytosol	21.08	23.24
EES15319	Sorghum	cytosol	24.02	22.37

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	EntrezGene:8067705	UniProt:C5Z6N6	EnsemblPlants:EER90101	ProteinID:EER90101
ProteinID:EER90101.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	EnsemblPlantsGene:SORBI_3010G204500
SUPFAM:SSF56235	unigene:Sbi.11350	UniParc:UPI0001A89A8D	RefSeq:XP_002438734.1	:	:

Description

hypothetical protein

Coordinates

chr10:-:54677310..54681222

Molecular Weight (calculated)

22855.5 Da

IEP (calculated)

4.904

GRAVY (calculated)

-0.039

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RVFKIHDKLY IGLSGLATDA QTLYQRLVFR HKLYQLREER DMKPETFASL VSALLYEKRF
101: GPYFCQPVIA GLGDDDVPFI CTMDCIGAKE LAKDFVVSGT ASESLYGACE SMYKPNMEPD ELFETISQAL NSSVDRDCLS GWGGYVLIVT PTEVREHVIK
201: SRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.