CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53242	Soybean	cytosol	85.78	95.11
KRH16390	Soybean	nucleus	93.63	93.63
KRH17983	Soybean	endoplasmic reticulum	93.63	93.63
Zm00001d036756_P001	Maize	cytosol	45.1	92.93
VIT_18s0001g02260.t01	Wine grape	cytosol	91.67	91.67
Solyc04g009410.2.1	Tomato	extracellular	91.67	91.67
PGSC0003DMT400082475	Potato	cytosol	91.67	91.67
EES06388	Sorghum	cytosol	89.71	89.71
Os06t0643100-01	Rice	plasma membrane	89.71	89.71
Os02t0182500-01	Rice	cytosol	89.22	89.22
EER90101	Sorghum	cytosol	89.22	89.22
TraesCS6A01G145800.1	Wheat	cytosol	88.24	88.24
TraesCS6B01G174200.1	Wheat	golgi	88.24	88.24
TraesCS6D01G135100.1	Wheat	plastid	87.75	87.75
TraesCS7D01G510600.1	Wheat	cytosol	87.75	87.75
HORVU0Hr1G015750.1	Barley	cytosol	87.75	87.75
TraesCS7A01G520800.1	Wheat	golgi	87.25	87.25
TraesCS7B01G437600.1	Wheat	cytosol	87.25	87.25
Zm00001d015526_P002	Maize	cytosol	88.24	84.91
HORVU6Hr1G065260.1	Barley	cytosol	19.12	78.0
Zm00001d036758_P002	Maize	extracellular	43.63	77.39
Zm00001d046600_P001	Maize	cytosol	86.76	76.96
KRH58259	Soybean	cytosol	27.45	72.73
HORVU7Hr1G115980.1	Barley	plastid	85.78	66.04
KRG99348	Soybean	nucleus	25.49	23.32
KRH45659	Soybean	endoplasmic reticulum, nucleus	25.49	23.32

Protein Annotations

EntrezGene:100306084	MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	EMBL:ACUP02002770	EMBL:BT090011	UniProt:C6SXW4
EnsemblPlantsGene:GLYMA_04G249300	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005839
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	EnsemblPlants:KRH64671	ProteinID:KRH64671	ProteinID:KRH64671.1	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS
InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	MEROPS:T01.P02	UniParc:UPI0001B154C3	:

Description

hypothetical protein

Coordinates

chr4:-:51603787..51607099

Molecular Weight (calculated)

22784.5 Da

IEP (calculated)

5.346

GRAVY (calculated)

-0.050

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA LVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDKLF IGLSGLATDA QTLYQRLLFR HKLYQLREER DMKPQTFASL VSAILYEKRF
101: GPYFCQPVIA GLGDDDKPFI CTMDAIGAKE LAKDFVVAGT ASESLYGACE SMFKPDMEPE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PTEVKERILK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.