Skip to main content
crop-pal logo
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG99348 Soybean nucleus 98.65 98.65
VIT_15s0048g00900.t01 Wine grape cytosol 94.17 94.17
Solyc02g084920.2.1 Tomato plastid 91.03 91.03
PGSC0003DMT400009060 Potato cytosol 90.58 90.58
PGSC0003DMT400058139 Potato cytosol 89.24 89.24
Bra003428.1-P Field mustard cytosol 87.89 87.89
Bra007565.1-P Field mustard cytosol 87.89 87.89
Bra014468.1-P Field mustard cytosol 87.89 87.89
AT3G60820.1 Thale cress cytosol 87.89 87.89
Zm00001d011021_P001 Maize cytosol, extracellular, mitochondrion, plastid 31.84 86.59
GSMUA_Achr5P18150_001 Banana cytosol, mitochondrion, peroxisome, plastid 55.61 82.67
GSMUA_Achr11P... Banana cytosol 80.72 81.45
GSMUA_Achr2P00960_001 Banana plasma membrane 80.27 81.0
Zm00001d006085_P002 Maize extracellular 79.82 80.54
TraesCS5D01G292900.1 Wheat cytosol 79.82 80.54
TraesCS5B01G284800.1 Wheat cytosol 79.82 80.54
TraesCS5A01G285600.1 Wheat plastid 79.82 80.54
Os09t0505600-01 Rice plastid 79.82 80.54
Zm00001d021051_P002 Maize mitochondrion 79.82 80.54
OQU89746 Sorghum cytosol 66.37 80.0
Zm00001d031599_P001 Maize cytosol, extracellular 76.68 78.08
EES15319 Sorghum cytosol 76.68 78.08
Os08t0529100-01 Rice cytosol 75.78 77.17
HORVU5Hr1G076130.2 Barley plastid 79.82 68.99
GSMUA_AchrUn_... Banana extracellular 27.8 59.62
Zm00001d018456_P001 Maize cytosol 28.7 59.26
Zm00001d043281_P001 Maize cytosol 28.7 59.26
CDY46344 Canola endoplasmic reticulum 50.67 42.8
KRH17983 Soybean endoplasmic reticulum 23.77 25.98
KRH16390 Soybean nucleus 23.77 25.98
KRH64671 Soybean cytosol 23.32 25.49
KRH53242 Soybean cytosol 20.63 25.0
KRH58259 Soybean cytosol 4.04 11.69
Protein Annotations
EntrezGene:100810291MapMan:19.2.6.1.2.6Gene3D:3.60.20.10EMBL:ACUP02005275EnsemblPlantsGene:GLYMA_08G286200GO:GO:0000502
GO:GO:0003674GO:GO:0003824GO:GO:0004175GO:GO:0004298GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005839GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0008233GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0051603UniProt:I1KXF0InterPro:IPR023333InterPro:IPR029055EnsemblPlants:KRH45659ProteinID:KRH45659
ProteinID:KRH45659.1InterPro:Ntn_hydrolases_NPFAM:PF00227ScanProsite:PS00854PFscan:PS51476PANTHER:PTHR11599
PANTHER:PTHR11599:SF107InterPro:Proteasome_bsu_CSInterPro:Proteasome_suB-typeInterPro:Proteasome_sua/bSUPFAM:SSF56235MEROPS:T01.986
UniParc:UPI00023386F4:::::
Description
hypothetical protein
Coordinates
chr8:-:39592442..39595940
Molecular Weight (calculated)
24554.2 Da
IEP (calculated)
6.661
GRAVY (calculated)
-0.188
Length
223 amino acids
Sequence
(BLAST)
001: MTKQHANWSP YDNNGGSCVA IAGADYCVIA ADTRMSTGYN ILTRDYSKIS QLAEKCVMAS SGFQADVKAL QKVLSARHLI YQHQHNKQMS CPAMAQLLSN
101: TLYYKRFFPY YAFNVLGGLD NEGKGCVFTY DAVGSYERVG YSSQGSGSTL IMPFLDNQLK SPSPLLLPAQ DAVTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKVEIVILNA SGIHREYMDL RKD
Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
Arabidopsis Description
PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.