Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG99348 | Soybean | nucleus | 98.65 | 98.65 |
VIT_15s0048g00900.t01 | Wine grape | cytosol | 94.17 | 94.17 |
Solyc02g084920.2.1 | Tomato | plastid | 91.03 | 91.03 |
PGSC0003DMT400009060 | Potato | cytosol | 90.58 | 90.58 |
PGSC0003DMT400058139 | Potato | cytosol | 89.24 | 89.24 |
Bra003428.1-P | Field mustard | cytosol | 87.89 | 87.89 |
Bra007565.1-P | Field mustard | cytosol | 87.89 | 87.89 |
Bra014468.1-P | Field mustard | cytosol | 87.89 | 87.89 |
AT3G60820.1 | Thale cress | cytosol | 87.89 | 87.89 |
Zm00001d011021_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 31.84 | 86.59 |
GSMUA_Achr5P18150_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 55.61 | 82.67 |
GSMUA_Achr11P... | Banana | cytosol | 80.72 | 81.45 |
GSMUA_Achr2P00960_001 | Banana | plasma membrane | 80.27 | 81.0 |
Zm00001d006085_P002 | Maize | extracellular | 79.82 | 80.54 |
TraesCS5D01G292900.1 | Wheat | cytosol | 79.82 | 80.54 |
TraesCS5B01G284800.1 | Wheat | cytosol | 79.82 | 80.54 |
TraesCS5A01G285600.1 | Wheat | plastid | 79.82 | 80.54 |
Os09t0505600-01 | Rice | plastid | 79.82 | 80.54 |
Zm00001d021051_P002 | Maize | mitochondrion | 79.82 | 80.54 |
OQU89746 | Sorghum | cytosol | 66.37 | 80.0 |
Zm00001d031599_P001 | Maize | cytosol, extracellular | 76.68 | 78.08 |
EES15319 | Sorghum | cytosol | 76.68 | 78.08 |
Os08t0529100-01 | Rice | cytosol | 75.78 | 77.17 |
HORVU5Hr1G076130.2 | Barley | plastid | 79.82 | 68.99 |
GSMUA_AchrUn_... | Banana | extracellular | 27.8 | 59.62 |
Zm00001d018456_P001 | Maize | cytosol | 28.7 | 59.26 |
Zm00001d043281_P001 | Maize | cytosol | 28.7 | 59.26 |
CDY46344 | Canola | endoplasmic reticulum | 50.67 | 42.8 |
KRH17983 | Soybean | endoplasmic reticulum | 23.77 | 25.98 |
KRH16390 | Soybean | nucleus | 23.77 | 25.98 |
KRH64671 | Soybean | cytosol | 23.32 | 25.49 |
KRH53242 | Soybean | cytosol | 20.63 | 25.0 |
KRH58259 | Soybean | cytosol | 4.04 | 11.69 |
Protein Annotations
EntrezGene:100810291 | MapMan:19.2.6.1.2.6 | Gene3D:3.60.20.10 | EMBL:ACUP02005275 | EnsemblPlantsGene:GLYMA_08G286200 | GO:GO:0000502 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
GO:GO:0051603 | UniProt:I1KXF0 | InterPro:IPR023333 | InterPro:IPR029055 | EnsemblPlants:KRH45659 | ProteinID:KRH45659 |
ProteinID:KRH45659.1 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 |
PANTHER:PTHR11599:SF107 | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 | MEROPS:T01.986 |
UniParc:UPI00023386F4 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:39592442..39595940
Molecular Weight (calculated)
24554.2 Da
IEP (calculated)
6.661
GRAVY (calculated)
-0.188
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKQHANWSP YDNNGGSCVA IAGADYCVIA ADTRMSTGYN ILTRDYSKIS QLAEKCVMAS SGFQADVKAL QKVLSARHLI YQHQHNKQMS CPAMAQLLSN
101: TLYYKRFFPY YAFNVLGGLD NEGKGCVFTY DAVGSYERVG YSSQGSGSTL IMPFLDNQLK SPSPLLLPAQ DAVTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKVEIVILNA SGIHREYMDL RKD
101: TLYYKRFFPY YAFNVLGGLD NEGKGCVFTY DAVGSYERVG YSSQGSGSTL IMPFLDNQLK SPSPLLLPAQ DAVTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKVEIVILNA SGIHREYMDL RKD
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
Arabidopsis Description
PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.