Factsheet for Zm00001d031599_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006805_P001
Zm00001d018961_P002
Zm00001d028871_P001
Zm00001d034443_P001
Zm00001d043365_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G60820.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT3G60820.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d053677_P001	AT5G11980.1	21798944
AT3G60820.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15319	Sorghum	cytosol	96.35	96.35
Os08t0529100-01	Rice	cytosol	89.04	89.04
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	32.88	87.8
Zm00001d021051_P002	Maize	mitochondrion	85.39	84.62
Zm00001d006085_P002	Maize	extracellular	85.39	84.62
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	53.88	78.67
GSMUA_Achr11P...	Banana	cytosol	78.54	77.83
GSMUA_Achr2P00960_001	Banana	plasma membrane	77.63	76.92
KRH45659	Soybean	endoplasmic reticulum, nucleus	78.08	76.68
KRG99348	Soybean	nucleus	78.08	76.68
VIT_15s0048g00900.t01	Wine grape	cytosol	76.71	75.34
PGSC0003DMT400009060	Potato	cytosol	76.71	75.34
Solyc02g084920.2.1	Tomato	plastid	76.26	74.89
Bra003428.1-P	Field mustard	cytosol	74.43	73.09
PGSC0003DMT400058139	Potato	cytosol	74.43	73.09
CDY52345	Canola	cytosol	74.43	73.09
CDX71775	Canola	cytosol	74.43	73.09
CDX67842	Canola	cytosol	74.43	73.09
Bra007565.1-P	Field mustard	cytosol	74.43	73.09
CDY56729	Canola	cytosol	73.97	72.65
CDX89080	Canola	cytosol	73.52	72.2
CDX71344	Canola	cytosol	73.52	72.2
AT3G60820.1	Thale cress	cytosol	73.06	71.75
Bra014468.1-P	Field mustard	cytosol	73.06	71.75
GSMUA_AchrUn_...	Banana	extracellular	27.85	58.65
Zm00001d018456_P001	Maize	cytosol	28.77	58.33
Zm00001d043281_P001	Maize	cytosol	28.77	58.33
CDX95297	Canola	cytosol	31.51	50.37
VIT_01s0146g00300.t01	Wine grape	plastid	41.1	46.88
CDY46344	Canola	endoplasmic reticulum	46.12	38.26
CDY07280	Canola	endoplasmic reticulum, plasma membrane	34.25	36.76
Zm00001d036756_P001	Maize	cytosol	11.87	26.26
Zm00001d015526_P002	Maize	cytosol	21.0	21.7
Zm00001d036758_P002	Maize	extracellular	10.96	20.87
Zm00001d046600_P001	Maize	cytosol	21.92	20.87

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	UniProt:A0A1D6KJT7	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	ProteinID:ONM03192.1	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF55	InterPro:Proteasome_beta1	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	UniParc:UPI0002215549	EnsemblPlantsGene:Zm00001d031599	EnsemblPlants:Zm00001d031599_P001	EnsemblPlants:Zm00001d031599_T001	SEG:seg

Description

Proteasome subunit beta type

Coordinates

chr1:+:195873413..195875927

Molecular Weight (calculated)

23951.5 Da

IEP (calculated)

6.757

GRAVY (calculated)

-0.172

Length

219 amino acids

Sequence
(BLAST)

001: MARFNPYENN GGTCLAVAGA DYCVVAADTR LSIGYSILSR DHSKISQLSD KCVLASSGFQ GDIKALQKAL AAKELIYEHN NNKKMSCPAM AQLLSNTLYY
101: KRFFPYYAFN VLAGLDTQGK GCVFTYDAVG SYERTGYSAQ GTGSALMMPV LDNQLKSPSP LLLPARDAVT PLSESDAVDL VKDVFASATE RDIYTGDRLE
201: IVVINKSGTH REYIELRKD

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.