Factsheet for Solyc02g084920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087650.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g115070.1.1
Solyc06g072990.1.1
Solyc09g082970.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	Solyc09g082970.2.1	AT3G22960.1	21798944
AT3G60820.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT3G60820.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT3G60820.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT3G60820.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT3G60820.1	Solyc01g087650.2.1	AT5G11980.1	21798944
AT3G60820.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT3G60820.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT3G60820.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT3G60820.1	Solyc06g072990.1.1	AT5G24660.1	21798944
AT3G60820.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009060	Potato	cytosol	99.55	99.55
VIT_15s0048g00900.t01	Wine grape	cytosol	93.72	93.72
KRG99348	Soybean	nucleus	92.38	92.38
KRH45659	Soybean	endoplasmic reticulum, nucleus	91.03	91.03
Bra003428.1-P	Field mustard	cytosol	87.0	87.0
Bra014468.1-P	Field mustard	cytosol	87.0	87.0
Bra007565.1-P	Field mustard	cytosol	87.0	87.0
AT3G60820.1	Thale cress	cytosol	86.1	86.1
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	30.94	84.15
GSMUA_Achr11P...	Banana	cytosol	80.27	81.0
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	54.26	80.67
Zm00001d006085_P002	Maize	extracellular	79.82	80.54
Zm00001d021051_P002	Maize	mitochondrion	79.82	80.54
GSMUA_Achr2P00960_001	Banana	plasma membrane	79.37	80.09
OQU89746	Sorghum	cytosol	66.37	80.0
Os09t0505600-01	Rice	plastid	78.48	79.19
TraesCS5D01G292900.1	Wheat	cytosol	78.48	79.19
TraesCS5A01G285600.1	Wheat	plastid	78.48	79.19
TraesCS5B01G284800.1	Wheat	cytosol	78.48	79.19
Os08t0529100-01	Rice	cytosol	75.34	76.71
EES15319	Sorghum	cytosol	75.34	76.71
Zm00001d031599_P001	Maize	cytosol, extracellular	74.89	76.26
HORVU5Hr1G076130.2	Barley	plastid	78.48	67.83
GSMUA_AchrUn_...	Banana	extracellular	28.25	60.58
Zm00001d018456_P001	Maize	cytosol	28.25	58.33
Zm00001d043281_P001	Maize	cytosol	28.25	58.33
CDY46344	Canola	endoplasmic reticulum	49.78	42.05
Solyc04g009410.2.1	Tomato	extracellular	22.42	24.51

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	ProteinID:CUX90932.1	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	InterPro:IPR023333
InterPro:IPR029055	UniProt:K4BB06	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF107	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235
EnsemblPlantsGene:Solyc02g084920.2	EnsemblPlants:Solyc02g084920.2.1	MEROPS:T01.986	UniParc:UPI0002768E45	:	:

Description

Proteasome subunit beta type-1 [Source:Projected from Arabidopsis thaliana (AT3G60820) UniProtKB/Swiss-Prot;Acc:P42742]

Coordinates

chr2:-:47970785..47976812

Molecular Weight (calculated)

24605.3 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.207

Length

223 amino acids

Sequence
(BLAST)

001: MTKQQANWSP YDNNGGTCVA VAGADYCVIA ADTRMSTGYN ILTRDYSKII KLADKCVMAS SGFQADVRAL QKVLASRHLI YQHQHNKQMS CPAMGQLLSN
101: TLYYKRFFPY YSFNVLGGLD NEGKGCVFTY DAVGSYERVG YSSQGSGSTL IMPFLDNQLK SPSPLLLPAV DAVTPLSESE AIDLVKTCFA SATERDIYTG
201: DKLEIVVLNA DGIRREEMDL RKD

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.