Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0763750-01 | |
| Os07t0181000-01 | |
| Os12t0538300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60820.1 | Os07t0181000-01 | AT3G22960.1 | 21798944 |
| AT3G60820.1 | Os12t0538300-01 | AT5G11980.1 | 21798944 |
| AT3G60820.1 | Os01t0763750-01 | AT5G61010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15319 | Sorghum | cytosol | 91.78 | 91.78 |
| Zm00001d031599_P001 | Maize | cytosol, extracellular | 89.04 | 89.04 |
| Os09t0505600-01 | Rice | plastid | 85.84 | 85.07 |
| GSMUA_Achr5P18150_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 54.79 | 80.0 |
| GSMUA_Achr11P... | Banana | cytosol | 80.37 | 79.64 |
| GSMUA_Achr2P00960_001 | Banana | plasma membrane | 79.45 | 78.73 |
| PGSC0003DMT400009060 | Potato | cytosol | 77.17 | 75.78 |
| KRH45659 | Soybean | endoplasmic reticulum, nucleus | 77.17 | 75.78 |
| KRG99348 | Soybean | nucleus | 77.17 | 75.78 |
| Solyc02g084920.2.1 | Tomato | plastid | 76.71 | 75.34 |
| PGSC0003DMT400058139 | Potato | cytosol | 76.71 | 75.34 |
| VIT_15s0048g00900.t01 | Wine grape | cytosol | 76.26 | 74.89 |
| CDX71775 | Canola | cytosol | 75.8 | 74.44 |
| CDY52345 | Canola | cytosol | 75.8 | 74.44 |
| Bra007565.1-P | Field mustard | cytosol | 75.8 | 74.44 |
| Bra003428.1-P | Field mustard | cytosol | 74.89 | 73.54 |
| CDX71344 | Canola | cytosol | 74.89 | 73.54 |
| CDX67842 | Canola | cytosol | 74.89 | 73.54 |
| CDX89080 | Canola | cytosol | 74.89 | 73.54 |
| Bra014468.1-P | Field mustard | cytosol | 74.43 | 73.09 |
| CDY56729 | Canola | cytosol | 74.43 | 73.09 |
| AT3G60820.1 | Thale cress | cytosol | 73.97 | 72.65 |
| GSMUA_AchrUn_... | Banana | extracellular | 28.31 | 59.62 |
| CDX95297 | Canola | cytosol | 31.05 | 49.63 |
| VIT_01s0146g00300.t01 | Wine grape | plastid | 42.01 | 47.92 |
| CDY46344 | Canola | endoplasmic reticulum | 47.95 | 39.77 |
| CDY07280 | Canola | endoplasmic reticulum, plasma membrane | 32.88 | 35.29 |
| Os02t0182500-01 | Rice | cytosol | 21.92 | 23.53 |
| Os06t0643100-01 | Rice | plasma membrane | 21.92 | 23.53 |
Protein Annotations
| MapMan:19.2.6.1.2.6 | Gene3D:3.60.20.10 | EntrezGene:4346117 | EMBL:AK071019 | ProteinID:BAD09106.1 | ProteinID:BAF24232.1 |
| ProteinID:BAT06375.1 | ProteinID:EEE69042.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 |
| InterPro:Ntn_hydrolases_N | EnsemblPlantsGene:Os08g0529100 | EnsemblPlants:Os08t0529100-01 | PFAM:PF00227 | ScanProsite:PS00854 | PFscan:PS51476 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF55 | InterPro:Proteasome_beta1 | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b |
| UniProt:Q6ZIB4 | SUPFAM:SSF56235 | UniParc:UPI000023AD12 | RefSeq:XP_015648939.1 | : | : |
Description
Similar to Proteasome subunit beta type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6). (Os08t0529100-01)
Coordinates
chr8:+:26342353..26344538
Molecular Weight (calculated)
23818.3 Da
IEP (calculated)
6.114
GRAVY (calculated)
-0.102
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFEVYENN GGTCVAVAGA DYCVVAADTR LSVGYSILSR DSSKIAHLAD KCVLASSGFQ GDVKALQRNL TAKELLYEHN HNKKMSCPAM AQLLSNTLYY
101: KRFFPYYAFN VLGGLDSEGK GCVFTYDAVG SYERTGYSAQ GTGAALMMPV LDNQLKSPSP LLLPARDAVT PLSQSDAVDL VKDVFASATE RDIYTGDKLE
201: IVVINSAGSH REFIELRKD
101: KRFFPYYAFN VLGGLDSEGK GCVFTYDAVG SYERTGYSAQ GTGAALMMPV LDNQLKSPSP LLLPARDAVT PLSQSDAVDL VKDVFASATE RDIYTGDKLE
201: IVVINSAGSH REFIELRKD
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
Arabidopsis Description
PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.