Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007565.1-P | Field mustard | cytosol | 95.07 | 95.07 |
| CDX71775 | Canola | cytosol | 95.07 | 95.07 |
| CDY52345 | Canola | cytosol | 95.07 | 95.07 |
| CDX89080 | Canola | cytosol | 94.62 | 94.62 |
| CDY56729 | Canola | cytosol | 94.62 | 94.62 |
| Bra003428.1-P | Field mustard | cytosol | 94.17 | 94.17 |
| Bra014468.1-P | Field mustard | cytosol | 94.17 | 94.17 |
| CDX67842 | Canola | cytosol | 94.17 | 94.17 |
| CDX71344 | Canola | cytosol | 94.17 | 94.17 |
| KRH45659 | Soybean | endoplasmic reticulum, nucleus | 87.89 | 87.89 |
| KRG99348 | Soybean | nucleus | 87.0 | 87.0 |
| Solyc02g084920.2.1 | Tomato | plastid | 86.1 | 86.1 |
| VIT_15s0048g00900.t01 | Wine grape | cytosol | 86.1 | 86.1 |
| PGSC0003DMT400009060 | Potato | cytosol | 85.65 | 85.65 |
| PGSC0003DMT400058139 | Potato | cytosol | 85.2 | 85.2 |
| Zm00001d011021_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 30.94 | 84.15 |
| GSMUA_Achr5P18150_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 52.91 | 78.67 |
| GSMUA_Achr11P... | Banana | cytosol | 77.13 | 77.83 |
| GSMUA_Achr2P00960_001 | Banana | plasma membrane | 77.13 | 77.83 |
| Zm00001d006085_P002 | Maize | extracellular | 76.23 | 76.92 |
| Zm00001d021051_P002 | Maize | mitochondrion | 76.23 | 76.92 |
| Os09t0505600-01 | Rice | plastid | 75.34 | 76.02 |
| OQU89746 | Sorghum | cytosol | 62.78 | 75.68 |
| TraesCS5A01G285600.1 | Wheat | plastid | 73.54 | 74.21 |
| TraesCS5B01G284800.1 | Wheat | cytosol | 73.54 | 74.21 |
| TraesCS5D01G292900.1 | Wheat | cytosol | 73.54 | 74.21 |
| Os08t0529100-01 | Rice | cytosol | 72.65 | 73.97 |
| EES15319 | Sorghum | cytosol | 72.65 | 73.97 |
| Zm00001d031599_P001 | Maize | cytosol, extracellular | 71.75 | 73.06 |
| HORVU5Hr1G076130.2 | Barley | plastid | 73.54 | 63.57 |
| CDX95297 | Canola | cytosol | 37.67 | 61.31 |
| Zm00001d018456_P001 | Maize | cytosol | 27.8 | 57.41 |
| Zm00001d043281_P001 | Maize | cytosol | 27.8 | 57.41 |
| GSMUA_AchrUn_... | Banana | extracellular | 26.46 | 56.73 |
| VIT_01s0146g00300.t01 | Wine grape | plastid | 47.53 | 55.21 |
| CDY07280 | Canola | endoplasmic reticulum, plasma membrane | 39.46 | 43.14 |
| AT1G21720.1 | Thale cress | cytosol | 24.66 | 26.96 |
| AT1G77440.1 | Thale cress | cytosol | 23.32 | 25.49 |
Protein Annotations
| MapMan:19.2.6.1.2.6 | Gene3D:3.60.20.10 | EntrezGene:825253 | UniProt:A0A178V6R9 | ProteinID:AEE80112.1 | ProteinID:AEE80114.1 |
| EMBL:AF043537 | EMBL:AK220787 | ArrayExpress:AT3G60820 | EnsemblPlantsGene:AT3G60820 | RefSeq:AT3G60820 | TAIR:AT3G60820 |
| RefSeq:AT3G60820-TAIR-G | EnsemblPlants:AT3G60820.1 | TAIR:AT3G60820.1 | EMBL:AY062790 | EMBL:AY081571 | EMBL:AY086619 |
| Unigene:At.20500 | ProteinID:CAB82686.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005839 | GO:GO:0005886 | GO:GO:0006508 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009817 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0019774 | GO:GO:0048046 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 |
| RefSeq:NP_001190146.1 | RefSeq:NP_191641.1 | InterPro:Ntn_hydrolases_N | ProteinID:OAP01949.1 | UniProt:P42742 | Symbol:PBF1 |
| PFAM:PF00227 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00854 | PFscan:PS51476 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF107 | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | SUPFAM:SSF56235 |
| UniParc:UPI0000000E7B | EMBL:X67338 | EMBL:X79806 | EMBL:Z26405 | SEG:seg | : |
Description
PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
Coordinates
chr3:-:22471769..22473939
Molecular Weight (calculated)
24645.4 Da
IEP (calculated)
7.493
GRAVY (calculated)
-0.264
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.