Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038565.1-P | Field mustard | cytosol | 99.02 | 99.02 |
| CDY04667 | Canola | cytosol | 99.02 | 99.02 |
| CDY08181 | Canola | cytosol | 99.02 | 99.02 |
| Bra012292.1-P | Field mustard | cytosol | 98.53 | 98.53 |
| Bra016408.1-P | Field mustard | cytosol | 98.53 | 98.53 |
| CDY00398 | Canola | extracellular | 98.53 | 98.53 |
| CDY67773 | Canola | extracellular | 92.16 | 98.43 |
| CDY71260 | Canola | cytosol | 91.67 | 97.91 |
| CDY01316 | Canola | cytosol | 98.53 | 97.57 |
| AT1G77440.1 | Thale cress | cytosol | 96.08 | 96.08 |
| Zm00001d036756_P001 | Maize | cytosol | 45.1 | 92.93 |
| KRH17983 | Soybean | endoplasmic reticulum | 92.65 | 92.65 |
| KRH16390 | Soybean | nucleus | 92.65 | 92.65 |
| Solyc04g009410.2.1 | Tomato | extracellular | 91.67 | 91.67 |
| PGSC0003DMT400082475 | Potato | cytosol | 91.67 | 91.67 |
| VIT_18s0001g02260.t01 | Wine grape | cytosol | 91.18 | 91.18 |
| EES06388 | Sorghum | cytosol | 88.73 | 88.73 |
| EER90101 | Sorghum | cytosol | 88.24 | 88.24 |
| Os06t0643100-01 | Rice | plasma membrane | 87.75 | 87.75 |
| Os02t0182500-01 | Rice | cytosol | 87.25 | 87.25 |
| TraesCS6A01G145800.1 | Wheat | cytosol | 87.25 | 87.25 |
| TraesCS6B01G174200.1 | Wheat | golgi | 87.25 | 87.25 |
| TraesCS6D01G135100.1 | Wheat | plastid | 87.25 | 87.25 |
| CDY70670 | Canola | cytosol, mitochondrion | 68.14 | 86.88 |
| HORVU0Hr1G015750.1 | Barley | cytosol | 86.76 | 86.76 |
| TraesCS7D01G510600.1 | Wheat | cytosol | 86.76 | 86.76 |
| TraesCS7B01G437600.1 | Wheat | cytosol | 86.27 | 86.27 |
| TraesCS7A01G520800.1 | Wheat | golgi | 86.27 | 86.27 |
| Zm00001d015526_P002 | Maize | cytosol | 87.25 | 83.96 |
| Zm00001d046600_P001 | Maize | cytosol | 85.78 | 76.09 |
| Zm00001d036758_P002 | Maize | extracellular | 42.65 | 75.65 |
| HORVU6Hr1G065260.1 | Barley | cytosol | 17.65 | 72.0 |
| HORVU7Hr1G115980.1 | Barley | plastid | 84.8 | 65.28 |
| GSMUA_Achr10P... | Banana | extracellular | 13.24 | 49.09 |
| Bra017945.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 92.65 | 45.0 |
| AT3G60820.1 | Thale cress | cytosol | 26.96 | 24.66 |
Protein Annotations
| MapMan:19.2.6.1.2.3 | Gene3D:3.60.20.10 | EntrezGene:838776 | UniProt:A0A178WJZ7 | ProteinID:AAD41426.1 | ProteinID:AEE30146.1 |
| EMBL:AF043532 | EMBL:AF344327 | EMBL:AK226397 | ArrayExpress:AT1G21720 | EnsemblPlantsGene:AT1G21720 | RefSeq:AT1G21720 |
| TAIR:AT1G21720 | RefSeq:AT1G21720-TAIR-G | EnsemblPlants:AT1G21720.1 | TAIR:AT1G21720.1 | EMBL:AY065070 | EMBL:AY085532 |
| EMBL:AY114628 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 | GO:GO:0004298 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005839 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0019774 | GO:GO:0043161 | GO:GO:0051603 | InterPro:IPR023333 | InterPro:IPR029055 | RefSeq:NP_564149.1 |
| InterPro:Ntn_hydrolases_N | ProteinID:OAP18668.1 | Symbol:PBC1 | PFAM:PF00227 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00854 | PFscan:PS51476 | PANTHER:PTHR11599 | PANTHER:PTHR11599:SF104 | InterPro:Proteasome_beta_3 | InterPro:Proteasome_bsu_CS |
| InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b | UniProt:Q9XI05 | SUPFAM:SSF56235 | UniParc:UPI00000A8E62 | EMBL:Y13173 |
Description
PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
Coordinates
chr1:+:7626182..7628290
Molecular Weight (calculated)
22799.5 Da
IEP (calculated)
5.104
GRAVY (calculated)
-0.043
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.