CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71260	Canola	cytosol	99.48	99.48
CDY38347	Canola	extracellular	97.91	97.91
Bra016408.1-P	Field mustard	cytosol	100.0	93.63
CDY04667	Canola	cytosol	99.48	93.14
CDY08181	Canola	cytosol	99.48	93.14
CDY00398	Canola	extracellular	98.95	92.65
CDY01316	Canola	cytosol	99.48	92.23
AT1G21720.1	Thale cress	cytosol	98.43	92.16
CDY70670	Canola	cytosol, mitochondrion	73.3	87.5
KRH17983	Soybean	endoplasmic reticulum	92.67	86.76
KRH16390	Soybean	nucleus	92.67	86.76
Solyc04g009410.2.1	Tomato	extracellular	92.15	86.27
PGSC0003DMT400082475	Potato	cytosol	91.1	85.29
CDY40893	Canola	mitochondrion	73.3	84.85
VIT_18s0001g02260.t01	Wine grape	cytosol	90.58	84.8
TraesCS6B01G174200.1	Wheat	golgi	86.91	81.37
EES06388	Sorghum	cytosol	86.91	81.37
Os06t0643100-01	Rice	plasma membrane	86.91	81.37
TraesCS6A01G145800.1	Wheat	cytosol	86.91	81.37
TraesCS6D01G135100.1	Wheat	plastid	86.91	81.37
HORVU0Hr1G015750.1	Barley	cytosol	86.39	80.88
EER90101	Sorghum	cytosol	86.39	80.88
TraesCS7D01G510600.1	Wheat	cytosol	85.86	80.39
Os02t0182500-01	Rice	cytosol	85.34	79.9
TraesCS7B01G437600.1	Wheat	cytosol	85.34	79.9
TraesCS7A01G520800.1	Wheat	golgi	85.34	79.9
Zm00001d036756_P001	Maize	cytosol	40.84	78.79
Zm00001d015526_P002	Maize	cytosol	85.34	76.89
CDY40889	Canola	mitochondrion	32.98	76.83
Zm00001d036758_P002	Maize	extracellular	45.03	74.78
Zm00001d046600_P001	Maize	cytosol	83.77	69.57
HORVU6Hr1G065260.1	Barley	cytosol	17.8	68.0
HORVU7Hr1G115980.1	Barley	plastid	84.82	61.13
GSMUA_Achr10P...	Banana	extracellular	13.61	47.27
CDX89080	Canola	cytosol	26.7	22.87
CDX71344	Canola	cytosol	26.7	22.87
CDX71775	Canola	cytosol	26.18	22.42
CDY56729	Canola	cytosol	26.18	22.42
CDX67842	Canola	cytosol	26.18	22.42
CDY52345	Canola	cytosol	26.18	22.42
CDX95297	Canola	cytosol	11.52	16.06
CDX71420	Canola	plastid	9.95	15.45
CDY46344	Canola	endoplasmic reticulum	20.94	15.15
CDY07280	Canola	endoplasmic reticulum, plasma membrane	15.71	14.71
CDY08180	Canola	plastid	10.99	9.46

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:A0A078JJU3	UniProt:A0A078JJU3	EnsemblPlants:CDY67773	ProteinID:CDY67773
ProteinID:CDY67773.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00066809001
InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	PFscan:PS51476	PANTHER:PTHR11599
PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI0004EE1703

Description

BnaAnng25130DBnaAnng25130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJU3]

Coordinates

chrLK036496:-:7102..8615

Molecular Weight (calculated)

21443.9 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.093

Length

191 amino acids

Sequence
(BLAST)

001: MVGKNCFAIA SDRRLGVQLQ TIATDFQRIS KIHDRVFIAL SGLATDVQTL YQRLVFRHKL YQLREERDMK PETFASLVSA ILYEKRFGPY LCQPVIAGLG
101: EDDKPFICTM DSIGAKELAK DFVVSGTASE SLYGACEAMY KPDMEAEELF ETISQALLSS VDRDCLSGWG GHVYVVTPTE IKERILKGRM D

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.