CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04667	Canola	cytosol	99.51	99.51
CDY08181	Canola	cytosol	99.51	99.51
CDY67773	Canola	extracellular	92.65	98.95
CDY38347	Canola	extracellular	92.65	98.95
AT1G21720.1	Thale cress	cytosol	98.53	98.53
CDY71260	Canola	cytosol	92.16	98.43
CDY01316	Canola	cytosol	99.02	98.06
Zm00001d036756_P001	Maize	cytosol	45.1	92.93
KRH16390	Soybean	nucleus	92.65	92.65
Solyc04g009410.2.1	Tomato	extracellular	92.16	92.16
KRH17983	Soybean	endoplasmic reticulum	91.67	91.67
PGSC0003DMT400082475	Potato	cytosol	91.18	91.18
VIT_18s0001g02260.t01	Wine grape	cytosol	90.2	90.2
Os06t0643100-01	Rice	plasma membrane	87.75	87.75
EES06388	Sorghum	cytosol	87.75	87.75
CDY70670	Canola	cytosol, mitochondrion	68.63	87.5
TraesCS6D01G135100.1	Wheat	plastid	87.25	87.25
TraesCS6B01G174200.1	Wheat	golgi	87.25	87.25
TraesCS6A01G145800.1	Wheat	cytosol	87.25	87.25
EER90101	Sorghum	cytosol	87.25	87.25
HORVU0Hr1G015750.1	Barley	cytosol	86.76	86.76
Os02t0182500-01	Rice	cytosol	86.27	86.27
TraesCS7D01G510600.1	Wheat	cytosol	86.27	86.27
TraesCS7A01G520800.1	Wheat	golgi	85.78	85.78
TraesCS7B01G437600.1	Wheat	cytosol	85.78	85.78
CDY40893	Canola	mitochondrion	69.12	85.45
Zm00001d015526_P002	Maize	cytosol	86.27	83.02
CDY40889	Canola	mitochondrion	30.88	76.83
Zm00001d046600_P001	Maize	cytosol	84.8	75.22
Zm00001d036758_P002	Maize	extracellular	41.67	73.91
HORVU6Hr1G065260.1	Barley	cytosol	17.65	72.0
HORVU7Hr1G115980.1	Barley	plastid	84.31	64.91
GSMUA_Achr10P...	Banana	extracellular	12.75	47.27
CDX89080	Canola	cytosol	27.45	25.11
CDX71344	Canola	cytosol	27.45	25.11
CDY56729	Canola	cytosol	26.96	24.66
CDY52345	Canola	cytosol	26.96	24.66
CDX71775	Canola	cytosol	26.96	24.66
CDX67842	Canola	cytosol	26.96	24.66
CDY46344	Canola	endoplasmic reticulum	21.08	16.29
CDX71420	Canola	plastid	9.8	16.26
CDX95297	Canola	cytosol	10.78	16.06
CDY07280	Canola	endoplasmic reticulum, plasma membrane	14.71	14.71
CDY08180	Canola	plastid	11.76	10.81

Protein Annotations

MapMan:19.2.6.1.2.3	Gene3D:3.60.20.10	GO:A0A078EM15	EnsemblPlants:CDY00398	ProteinID:CDY00398	ProteinID:CDY00398.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005839	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0019774	GO:GO:0043161	GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00110027001
InterPro:IPR023333	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227	ScanProsite:PS00854	PFscan:PS51476
PANTHER:PTHR11599	PANTHER:PTHR11599:SF104	InterPro:Proteasome_beta_3	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type	InterPro:Proteasome_sua/b
SUPFAM:SSF56235	UniParc:UPI0004EE2BC4	:	:	:	:

Description

BnaC07g14280D

Coordinates

chrLK031918:+:530294..532176

Molecular Weight (calculated)

22812.5 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.058

Length

204 amino acids

Sequence
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGEDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PNEIKERILK
201: GRMD

Best Arabidopsis Sequence Match ( AT1G21720.1 )
(BLAST)

001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDRVF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPYLCQPVIA GLGDDDKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMYKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYIVT PTEIKERILK
201: GRMD

Arabidopsis Description

PBC1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178WJZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.