CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX80461
CDX91181
CDX92969
CDX94878
CDY02176
CDY05402
CDY05452
CDY08148
CDY23090
CDY35484
CDY40829
CDY67814
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	CDX92969	AT3G22960.1	21798944
AT3G60820.1	CDX94878	AT3G22960.1	21798944
AT3G60820.1	CDY35484	AT3G22960.1	21798944
AT3G60820.1	CDY40829	AT3G22960.1	21798944
AT3G60820.1	CDY08148	AT3G49580.1	21798944
AT3G60820.1	CDX70438	AT5G11980.1	21798944
AT3G60820.1	CDX78461	AT5G11980.1	21798944
AT3G60820.1	CDX91181	AT5G11980.1	21798944
AT3G60820.1	CDY67814	AT5G11980.1	21798944
AT3G60820.1	CDX80461	AT5G24660.1	21798944
AT3G60820.1	CDY05402	AT5G24660.1	21798944
AT3G60820.1	CDY05452	AT5G24660.1	21798944
AT3G60820.1	CDY69515	AT5G24660.1	21798944
AT3G60820.1	CDY02176	AT5G61010.1	21798944
AT3G60820.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95297	Canola	cytosol	48.04	71.53
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	36.27	49.33
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	17.16	42.68
Bra003428.1-P	Field mustard	cytosol	46.08	42.15
CDY52345	Canola	cytosol	46.08	42.15
CDX71775	Canola	cytosol	46.08	42.15
CDX67842	Canola	cytosol	46.08	42.15
CDY56729	Canola	cytosol	45.59	41.7
CDX89080	Canola	cytosol	45.1	41.26
CDX71344	Canola	cytosol	45.1	41.26
OQU89746	Sorghum	cytosol	36.27	40.0
AT3G60820.1	Thale cress	cytosol	43.14	39.46
Os09t0505600-01	Rice	plastid	37.75	34.84
Zm00001d021051_P002	Maize	mitochondrion	37.25	34.39
GSMUA_Achr2P00960_001	Banana	plasma membrane	37.25	34.39
Zm00001d031599_P001	Maize	cytosol, extracellular	36.76	34.25
Zm00001d006085_P002	Maize	extracellular	36.76	33.94
GSMUA_Achr11P...	Banana	cytosol	36.76	33.94
TraesCS5A01G285600.1	Wheat	plastid	36.27	33.48
TraesCS5B01G284800.1	Wheat	cytosol	36.27	33.48
TraesCS5D01G292900.1	Wheat	cytosol	36.27	33.48
Os08t0529100-01	Rice	cytosol	35.29	32.88
EES15319	Sorghum	cytosol	35.29	32.88
HORVU5Hr1G076130.2	Barley	plastid	36.27	28.68
Zm00001d018456_P001	Maize	cytosol	11.76	22.22
Zm00001d043281_P001	Maize	cytosol	11.76	22.22
CDY40889	Canola	mitochondrion	8.33	20.73
CDY46344	Canola	endoplasmic reticulum	25.98	20.08
CDY40893	Canola	mitochondrion	13.24	16.36
CDY71260	Canola	cytosol	14.71	15.71
CDY67773	Canola	extracellular	14.71	15.71
CDY38347	Canola	extracellular	14.71	15.71
CDY70670	Canola	cytosol, mitochondrion	12.25	15.62
CDY08181	Canola	cytosol	14.71	14.71
CDY04667	Canola	cytosol	14.71	14.71
CDY00398	Canola	extracellular	14.71	14.71
CDY01316	Canola	cytosol	14.71	14.56
CDX71420	Canola	plastid	4.9	8.13
GSMUA_AchrUn_...	Banana	extracellular	3.92	7.69
CDY08180	Canola	plastid	6.37	5.86

Protein Annotations

EnsemblPlants:CDY07280	EnsemblPlantsGene:GSBRNA2T00124147001	Gene3D:3.60.20.10	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PANTHER:PTHR11599
PANTHER:PTHR11599:SF107	ProteinID:CDY07280	ProteinID:CDY07280.1	SUPFAM:SSF56235	TMHMM:TMhelix	UniParc:UPI0004EE1D32
MapMan:35.1	:	:	:	:	:

Description

BnaC04g18910D

Coordinates

chrLK031976:+:963623..965930

Molecular Weight (calculated)

22852.8 Da

IEP (calculated)

5.005

GRAVY (calculated)

0.231

Length

204 amino acids

Sequence
(BLAST)

001: MCLILFLWGW AVFIYAFIIT RPTLSHLSGI SILQRKALYI NGIVSCNEQI HHCEISKVTL CQASTPTIAS SMSISPRYTL LAMELIKYMQ QDNDVELSSL
101: EMGKSCVFTY DAVGSYEKVG YSAQGSGSTL IMPSLTISSR VPGRFCFLPR FDTITPFSEP EAVDLVNTVF ASATERDIYI GDKLEIMIFK ADDIRTEVME
201: LRKD

Best Arabidopsis Sequence Match ( AT3G60820.1 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.