Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017974.1-P | Field mustard | cytosol | 91.4 | 98.84 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 76.34 | 75.53 |
| CDY08146 | Canola | cytosol | 72.04 | 69.07 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 64.52 | 64.52 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 62.37 | 62.37 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 64.52 | 61.86 |
| CDY05402 | Canola | nucleus | 62.37 | 59.79 |
| Solyc03g096780.1.1 | Tomato | nucleus | 49.46 | 40.71 |
| PGSC0003DMT400001474 | Potato | plastid | 48.39 | 38.46 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 46.24 | 37.72 |
| KRH64261 | Soybean | nucleus | 48.39 | 37.19 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 47.31 | 36.67 |
| PGSC0003DMT400001476 | Potato | plastid | 44.09 | 36.61 |
| Solyc03g096770.1.1 | Tomato | nucleus | 45.16 | 36.52 |
| PGSC0003DMT400001475 | Potato | plastid | 46.24 | 36.44 |
| PGSC0003DMT400069515 | Potato | cytosol | 44.09 | 36.28 |
| Solyc03g096760.1.1 | Tomato | plastid | 43.01 | 35.71 |
| KRH16959 | Soybean | nucleus | 37.63 | 29.91 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 41.94 | 28.47 |
Protein Annotations
| EnsemblPlants:CDY08148 | EnsemblPlantsGene:GSBRNA2T00125442001 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010438 | GO:GO:0033554 |
| ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | ProteinID:CDY08148 | ProteinID:CDY08148.1 | SEG:seg |
| UniParc:UPI0004EEF26F | UniProt:A0A078F8R7 | MapMan:35.2 | : | : | : |
Description
BnaA06g15780DBnaA06g15780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8R7]
Coordinates
chrLK031983:-:692917..693385
Molecular Weight (calculated)
10945.1 Da
IEP (calculated)
4.322
GRAVY (calculated)
-0.547
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKEGGYMTV AAEEMEELRR RSRELEREVE EMKTAMLELW RRTVMTEEAE ERLCSQLAEL EVESLDQARD YHDRVVFLMD QISRLSSLSI VSS
1: MGKGGGYVTV AAEEVEELRR RNGELEREME EMKKEMVQLW RRTVVAEEAE ERLCSQLAEL EVESLDQARD YHSRIVFLMD QISRLSSSSL EVVVTNS
Arabidopsis Description
LSU3Protein RESPONSE TO LOW SULFUR 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.