CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 2
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68479
CDX68481
CDX73637
CDX78091
CDX83034
CDX83035
CDX90603
CDY23217
CDY29081
CDY44979
CDY67344
CDY68128
CDY68190
CDY69054

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48090.1	CDX68479	AT3G48090.1	11574472
AT3G48090.1	CDX68481	AT3G48090.1	11574472
AT3G48090.1	CDX83034	AT3G48090.1	11574472
AT3G48090.1	CDX83035	AT3G48090.1	11574472
AT3G48090.1	CDY44979	AT3G48090.1	11574472
AT3G48090.1	CDY68128	AT3G48090.1	11574472
AT3G48090.1	CDX73637	AT3G52430.1	11574472
AT3G48090.1	CDX78091	AT3G52430.1	11574472
AT3G48090.1	CDX90603	AT3G52430.1	11574472
AT3G48090.1	CDY23217	AT3G52430.1	11574472
AT3G48090.1	CDY29081	AT3G52430.1	11574472
AT3G48090.1	CDY67344	AT3G52430.1	11574472
AT3G48090.1	CDY68190	AT3G52430.1	11574472
AT3G48090.1	CDY69054	AT3G52430.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68479	Canola	cytosol, extracellular, plastid	93.73	93.73
Bra033774.1-P	Field mustard	cytosol	96.96	86.15
CDY68128	Canola	cytosol	72.05	63.17
CDY44979	Canola	cytosol	71.48	62.67
CDX83035	Canola	cytosol	61.98	56.21
AT3G48080.1	Thale cress	cytosol	61.98	51.83
AT3G48090.1	Thale cress	cytosol	61.22	51.69
CDX68481	Canola	cytosol	49.05	51.09
PGSC0003DMT400083030	Potato	cytosol	40.49	36.41
KRH63455	Soybean	cytosol	40.68	34.97
VIT_17s0000g07560.t01	Wine grape	cytosol	39.54	34.9
Solyc06g071280.2.1	Tomato	cytosol	39.92	34.88
KRH54468	Soybean	cytosol	38.97	33.23
KRH54464	Soybean	cytosol, endoplasmic reticulum	38.21	32.42
VIT_17s0000g07370.t01	Wine grape	cytosol	36.12	31.67
KRH54465	Soybean	cytosol	36.88	31.54
Os09t0392100-01	Rice	cytosol, nucleus, peroxisome, plastid	37.07	31.4
GSMUA_Achr8P25290_001	Banana	plastid	38.02	31.1
TraesCS5B01G200800.2	Wheat	cytosol, nucleus, peroxisome, plastid	34.6	31.06
KXG35573	Sorghum	cytosol, nucleus, peroxisome	36.12	31.05
TraesCS5D01G208600.1	Wheat	plastid	36.69	30.98
TraesCS5A01G202200.2	Wheat	cytosol, nucleus, peroxisome, plastid	36.5	30.77
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	36.12	30.69
VIT_17s0000g07420.t01	Wine grape	cytosol	36.69	30.3
HORVU5Hr1G060060.2	Barley	plastid	36.88	29.31
CDY67344	Canola	plastid	18.44	22.56
CDY23217	Canola	plastid	17.68	21.63
CDX70584	Canola	cytosol	21.48	21.48
CDY69054	Canola	cytosol	17.3	20.59
CDY68190	Canola	cytosol	12.36	20.5
VIT_17s0000g07400.t01	Wine grape	plastid	25.29	19.85
CDY09901	Canola	cytosol, endoplasmic reticulum, nucleus	14.45	19.79
CDX70582	Canola	cytosol	19.39	19.65
CDX78601	Canola	nucleus	18.63	19.52
CDY29081	Canola	cytosol, endoplasmic reticulum, peroxisome	20.15	19.31
CDX78600	Canola	extracellular	19.01	18.73
CDX70581	Canola	cytosol	18.63	18.63
CDX73637	Canola	cytosol, nucleus, peroxisome	19.2	18.43
CDX78091	Canola	cytosol, nucleus, peroxisome	18.82	18.1
CDY09899	Canola	extracellular, vacuole	18.63	18.08
CDY29080	Canola	extracellular	2.28	17.14
CDY69990	Canola	endoplasmic reticulum	18.44	17.11
CDY00844	Canola	extracellular	2.09	16.92
CDX90603	Canola	plasma membrane	19.77	16.51

Protein Annotations

EnsemblPlants:CDX83034	EnsemblPlantsGene:GSBRNA2T00138510001	Gene3D:3.40.50.1820	GO:A0A078D460	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:AB_hydrolase	InterPro:Fungal_lipase-like	InterPro:IPR029058	PANTHER:PTHR21493	PANTHER:PTHR21493:SF94
PFAM:PF01764	ProteinID:CDX83034	ProteinID:CDX83034.1	SUPFAM:SSF53474	UniParc:UPI0004EE7C3B	MapMan:26.8.2.4.1

Description

BnaA01g20340D

Coordinates

chrLK031831:+:922859..925201

Molecular Weight (calculated)

59496.7 Da

IEP (calculated)

7.884

GRAVY (calculated)

-0.411

Length

526 amino acids

Sequence
(BLAST)

001: MVLEALAGVS NALIATSWRA STTAYSTDHF HIEVEGDTVF FAFKPSFLVK DWFDPENASP FGETKMNREQ FPCMRSIGND VNATVNEAFL KNLKLLVSTS
101: FPHSVKTVVD SMRSQRIVFT GHSSGGATAI LATSGFFPEP LCLTFGAPLV GDSVFKHALG RENWSRFFVN FVTRFDIVPR IMLARKASTK QALPYALSKL
201: GRKSGNQGND QSITGFFATV MKDTATVAHQ AVCKLIGNGE PFLKTLSSFL ELSPYRPAGT FVFSTGTRLV SHLPLDGGES ALSDLGLSTR ARQCVRAAFE
301: AEKKQVNNQS KIDAKQPTIL EKLVWIEDEY KPKCLTHKIG YYDSFKESNE EKDFRANVKR AELAGIYDEV LGLVKEGQLP DGFEGRIEWI ELANRYRRLI
401: EPLDISNYHR HLKNEDTGPY MIHGRPNRYK HAQRGYEHEL LKAGRSAEEI KRSDCGSCFW AEVEELRRKE YDEARVTKLE ELLEGWIRDK EVDDEHIFLE
501: GSSFRKWWHS LPEVHRRGSS LQVRMG

Best Arabidopsis Sequence Match ( AT3G48080.1 )
(BLAST)

001: MAFEALTGVN GDLVTISWMA SKGANQTEHY LKEEVGGTVF FAFRASFSSE DLFATENTSP FGEIKMKRNQ FPCMRSIGND VDTTVNEAFL KSLEVLIGPR
101: TSFHASVQSA VDRKQQVVFT GHSFGGATAI LATVWYLETY FIRDAYAAPE PRCVTFGAPL VGDYIFKHAL GRENWSRFFV NFVTRFDIVP RIMLARKTTI
201: EQTLSYVLGK LDSTRAPIHE SDQVITEFYT RVMRDTYTVA SKAVCQLIGN GEAFLETLSS FYELSPYRPV GTFVFSTQKR LVVVNNSDAI LQMLFYTCQS
301: NDEQELSVIP FLSIRDHHGY EELVQSIGIK LLNHLDLHNP LLDGENSIGS ALDDLGMSTR ARQCIHAALE AEKQRVENQK KIETKRDQIV ERLTWIVEVY
401: KPKCQAHKNG YYDSFKDSNE ENDFKANVKR VELAGIFDEV LGLVKKGQLP DGFEGSRGWI NLATQYRRLI EPLDISNYHG QLKNEDTGPY MLHGRPSRYK
501: YAQRGYEHDI LKPTGMIAKD VFWSKVNGLN LGLQQDIQEI LKNSGSECGS CFWAEVEELK GKPYEEVQVR FKTLEGLLEG WIKDGEVDEK EIFLEGSTFR
601: KWWNTLPDSH KIHAPLYPRE RMMDETRAT

Arabidopsis Description

EDS1BProtein EDS1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SU71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.