Factsheet for VIT_17s0000g07370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02390.t01
VIT_17s0000g07370.t01
VIT_17s0000g07400.t01
VIT_17s0000g07420.t01
VIT_17s0000g07560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48090.1	VIT_17s0000g07370.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07400.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07420.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_17s0000g07560.t01	AT3G48090.1	11574472
AT3G48090.1	VIT_07s0031g02390.t01	AT3G52430.1	11574472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07420.t01	Wine grape	cytosol	83.0	78.18
VIT_17s0000g07560.t01	Wine grape	cytosol	67.17	67.62
VIT_17s0000g07400.t01	Wine grape	plastid	56.0	50.15
PGSC0003DMT400083030	Potato	cytosol	44.83	45.98
Solyc06g071280.2.1	Tomato	cytosol	44.5	44.35
KRH54468	Soybean	cytosol	44.83	43.6
KRH54465	Soybean	cytosol	44.5	43.41
KRH63455	Soybean	cytosol	44.17	43.3
KRH54464	Soybean	cytosol, endoplasmic reticulum	44.33	42.9
Os09t0392100-01	Rice	cytosol, nucleus, peroxisome, plastid	39.33	38.0
GSMUA_Achr8P25290_001	Banana	plastid	40.5	37.79
KXG35573	Sorghum	cytosol, nucleus, peroxisome	38.17	37.42
TraesCS5D01G208600.1	Wheat	plastid	38.67	37.24
TraesCS5A01G202200.2	Wheat	cytosol, nucleus, peroxisome, plastid	38.67	37.18
Zm00001d005708_P001	Maize	cytosol, nucleus, peroxisome, plastid	38.17	37.0
TraesCS5B01G200800.2	Wheat	cytosol, nucleus, peroxisome, plastid	35.5	36.35
CDX83034	Canola	cytosol, extracellular, plastid	31.67	36.12
CDX68479	Canola	cytosol, extracellular, plastid	31.17	35.55
Bra033774.1-P	Field mustard	cytosol	34.83	35.3
HORVU5Hr1G060060.2	Barley	plastid	38.67	35.05
Bra033775.1-P	Field mustard	cytosol	35.0	35.0
CDY68128	Canola	cytosol	34.0	34.0
Bra018085.1-P	Field mustard	cytosol	34.0	34.0
AT3G48090.1	Thale cress	cytosol	35.17	33.87
CDY44979	Canola	cytosol	33.67	33.67
CDX83035	Canola	cytosol	32.33	33.45
AT3G48080.1	Thale cress	cytosol	34.67	33.07
CDX68481	Canola	cytosol	25.17	29.9
VIT_14s0066g01820.t01	Wine grape	cytosol	20.67	24.8
VIT_05s0077g01720.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	22.17	23.54
VIT_05s0077g01750.t01	Wine grape	extracellular, plasma membrane	22.0	23.49
VIT_07s0031g02390.t01	Wine grape	cytosol	23.33	22.62
VIT_14s0066g01840.t01	Wine grape	mitochondrion	12.33	22.29
VIT_14s0066g01810.t01	Wine grape	cytosol	21.83	21.76
VIT_05s0077g01730.t01	Wine grape	cytosol	21.0	12.08
VIT_14s0066g01830.t01	Wine grape	mitochondrion	21.67	11.25

Protein Annotations

EntrezGene:100253457	wikigene:100253457	MapMan:26.8.2.4.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	ProteinID:CBI15116
ProteinID:CBI15116.3	ncoils:Coil	UniProt:D7SI06	EMBL:FN594950	InterPro:Fungal_lipase-like	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058
EntrezGene:LOC100253457	wikigene:LOC100253457	PFAM:PF01764	PANTHER:PTHR21493	PANTHER:PTHR21493:SF94	SUPFAM:SSF53474
UniParc:UPI00015C850C	ArrayExpress:VIT_17s0000g07370	EnsemblPlantsGene:VIT_17s0000g07370	EnsemblPlants:VIT_17s0000g07370.t01	unigene:Vvi.20809	RefSeq:XP_002280786
RefSeq:XP_002280786.1	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:8239664..8241675

Molecular Weight (calculated)

67919.0 Da

IEP (calculated)

7.113

GRAVY (calculated)

-0.445

Length

600 amino acids

Sequence
(BLAST)

001: MGETLDRIGL SGAVINAAAS LAMKAHDSTR EPFLLKKPRG LSVAVVAFAG SWLPDDWCAE TPFGETTIDA GTFPSLKSLG DDGVALVNGS FLRRFKAILG
101: QSSLAEKVKK VIGEKKRVIF TGYSSGAPVA ILATLYLLEK SEPNQSPPRC VTFGSPLVGD RIFGHAVRRE KWSDHFIHFV MRYDVIPRIM LGPSSTEHKQ
201: ILDFFNPGSE SFRKHTDSSL GLYSSVMRNA SMVANYDACN FMGCRIPALE TLRNFIELSP YRPFGTYIFC SGSGKLVVVR NPNAVLQILF YCAQWSQEED
301: AEAAKKGLNE HLDYQKELQS LGKQNVVYLD HLEELPVSSD GSPATVNTTL NDLGLSTQAM LCLQATGELE KRKSRNQDKI INDYKQKIEG ELRKLSEYKE
401: KAETCGQSYY DSFKLQEKPD AFHANVSRLV LAGYWDEMME MLKAYELPDE FEKRQDLIQL GTNYLRMVEP LDIANFYRHA KDEETGFYVK KGTRPKRYRY
501: IQSWLEYAEK KPSGSHSESC FWAEVEDLRI KTRSNGSSPE IKQKVQQLGQ NLIKWIDDES LGKDVLLENS TFVKWWKSLP PEYKSEPESS RIMKLIHEKD

Best Arabidopsis Sequence Match ( AT3G48090.1 )
(BLAST)

001: MAFEALTGIN GDLITRSWSA SKQAYLTERY HKEEAGAVVI FAFQPSFSEK DFFDPDNKSS FGEIKLNRVQ FPCMRKIGKG DVATVNEAFL KNLEAIIDPR
101: TSFQASVEMA VRSRKQIVFT GHSSGGATAI LATVWYLEKY FIRNPNVYLE PRCVTFGAPL VGDSIFSHAL GREKWSRFFV NFVSRFDIVP RIMLARKASV
201: EETLPHVLAQ LDPRKSSVQE SEQRITEFYT RVMRDTSTVA NQAVCELTGS AEAFLETLSS FLELSPYRPA GTFVFSTEKR LVAVNNSDAI LQMLFYTSQA
301: SDEQEWSLIP FRSIRDHHSY EELVQSMGKK LFNHLDGENS IESTLNDLGV STRGRQYVQA ALEEEKKRVE NQKKIIQVIE QERFLKKLAW IEDEYKPKCQ
401: AHKNGYYDSF KVSNEENDFK ANVKRAELAG VFDEVLGLMK KCQLPDEFEG DIDWIKLATR YRRLVEPLDI ANYHRHLKNE DTGPYMKRGR PTRYIYAQRG
501: YEHYILKPNG MIAEDVFWNK VNGLNLGLQL EEIQETLKNS GSECGSCFWA EVEELKGKPY EEVEVRVKTL EGMLGEWITD GEVDDKEIFL EGSTFRKWWI
601: TLPKNHKSHS PLRDYMMDEI TDT

Arabidopsis Description

EDS1Protein EDS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU72]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.